Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QR42_RS05085 Genome accession   NZ_CP010075
Coordinates   1042435..1043013 (+) Length   192 a.a.
NCBI ID   WP_039177625.1    Uniprot ID   A0AAX0Z522
Organism   Bacillus sp. WP8     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1037435..1048013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS05065 (QR42_05065) - 1037931..1039226 (-) 1296 WP_039177621.1 globin-coupled sensor protein -
  QR42_RS05070 (QR42_05070) - 1039317..1040849 (-) 1533 WP_039177623.1 FAD-dependent oxidoreductase -
  QR42_RS05075 (QR42_05075) - 1040992..1041852 (+) 861 WP_024425480.1 SDR family oxidoreductase -
  QR42_RS05080 (QR42_05080) - 1041909..1042145 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  QR42_RS05085 (QR42_05085) comK 1042435..1043013 (+) 579 WP_039177625.1 competence protein ComK Regulator
  QR42_RS05090 (QR42_05090) - 1043336..1043818 (+) 483 WP_039177626.1 hypothetical protein -
  QR42_RS05095 (QR42_05095) - 1043849..1045288 (-) 1440 WP_039177628.1 PLP-dependent aminotransferase family protein -
  QR42_RS05100 (QR42_05100) - 1045434..1046603 (+) 1170 WP_039177630.1 MFS transporter -
  QR42_RS05105 (QR42_05105) - 1046669..1046947 (+) 279 WP_039183050.1 barstar family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22354.36 Da        Isoelectric Point: 8.7996

>NTDB_id=134029 QR42_RS05085 WP_039177625.1 1042435..1043013(+) (comK) [Bacillus sp. WP8]
MSGISETPLDSYVINQTTMAVLSVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQTIKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=134029 QR42_RS05085 WP_039177625.1 1042435..1043013(+) (comK) [Bacillus sp. WP8]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTTCTTTCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATCGAAAGAGAGACAAGCTTTTATGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATATGAAGTAACAGGTATATCTCATAAACCTCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCACCTTTACAAATGAGCAAACCATCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGAACAGCATATCTCCGAACGAAATTTCAAGATCGTCTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGGGA
GCTTCGTAACAGATATTAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615

Multiple sequence alignment