Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   R50345_RS22205 Genome accession   NZ_CP009281
Coordinates   5011802..5012239 (+) Length   145 a.a.
NCBI ID   WP_042130177.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R5-0345     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5006802..5017239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R50345_RS31735 - 5007594..5007752 (+) 159 WP_197069706.1 hypothetical protein -
  R50345_RS22180 (R50345_22795) - 5007755..5008090 (-) 336 WP_042130171.1 YolD-like family protein -
  R50345_RS22185 (R50345_22805) - 5008470..5009030 (-) 561 WP_042130173.1 hypothetical protein -
  R50345_RS22190 - 5009149..5009637 (+) 489 WP_042130174.1 PH domain-containing protein -
  R50345_RS22195 (R50345_22815) - 5009696..5011171 (-) 1476 WP_042130176.1 glycosyl hydrolase -
  R50345_RS22200 (R50345_22820) - 5011284..5011700 (-) 417 WP_042132382.1 cytidine deaminase -
  R50345_RS22205 (R50345_22825) nucA/comI 5011802..5012239 (+) 438 WP_042130177.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  R50345_RS31420 - 5012319..5012465 (-) 147 WP_156114850.1 hypothetical protein -
  R50345_RS30940 - 5012616..5012792 (+) 177 WP_076098563.1 YjfB family protein -
  R50345_RS22210 (R50345_22840) - 5012944..5013477 (+) 534 WP_042132383.1 ImmA/IrrE family metallo-endopeptidase -
  R50345_RS31425 - 5013527..5013718 (+) 192 WP_231573877.1 hypothetical protein -
  R50345_RS31430 - 5013842..5014012 (-) 171 WP_156114852.1 hypothetical protein -
  R50345_RS22215 (R50345_22855) - 5014090..5014422 (+) 333 WP_052414697.1 hypothetical protein -
  R50345_RS22220 (R50345_22860) - 5014602..5015096 (+) 495 WP_042130179.1 sigma-70 family RNA polymerase sigma factor -
  R50345_RS22225 (R50345_22865) - 5015093..5016082 (+) 990 WP_042130181.1 hypothetical protein -
  R50345_RS22230 (R50345_22870) - 5016366..5016713 (+) 348 WP_042130183.1 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16163.09 Da        Isoelectric Point: 4.4375

>NTDB_id=128059 R50345_RS22205 WP_042130177.1 5011802..5012239(+) (nucA/comI) [Paenibacillus sp. FSL R5-0345]
MKTKKLITSLIIVVLLVLGSYWFEQNGDPAAPSSPSDSEVVQLIFPSDRYPETAKHIQDAIAKGESATCTINREQAEENR
KESLRGIPTKKGYDRDEWPMAMCDEGGEGADIEYITPKDNRGAGSWVGNQLEDYADGTRVEFMFK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=128059 R50345_RS22205 WP_042130177.1 5011802..5012239(+) (nucA/comI) [Paenibacillus sp. FSL R5-0345]
ATGAAAACAAAAAAATTAATCACCAGTCTCATCATTGTTGTGTTACTTGTCTTGGGCAGTTACTGGTTTGAACAGAACGG
AGACCCGGCAGCCCCCTCATCTCCATCCGATTCCGAAGTTGTTCAGCTGATCTTCCCGTCAGATCGTTATCCTGAGACCG
CTAAGCACATTCAGGATGCGATTGCCAAAGGGGAATCTGCCACATGTACCATTAACCGTGAGCAGGCTGAAGAGAACCGC
AAAGAATCCTTAAGAGGGATCCCTACCAAAAAAGGCTACGACCGCGACGAATGGCCCATGGCCATGTGTGATGAAGGCGG
CGAAGGGGCCGACATTGAATACATAACGCCAAAAGATAATCGCGGTGCAGGAAGCTGGGTTGGTAATCAGCTAGAAGATT
ATGCGGATGGAACCCGCGTAGAATTTATGTTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.932

71.034

0.49

Multiple sequence alignment