Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MA06_RS07540 Genome accession   NZ_CP007626
Coordinates   1057685..1058119 (-) Length   144 a.a.
NCBI ID   WP_029426887.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain 219298     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1052685..1063119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA06_RS07525 (DJ92_1098) - 1053521..1054078 (+) 558 WP_040118967.1 PadR family transcriptional regulator -
  MA06_RS07530 (DJ92_1099) metE 1054670..1056958 (+) 2289 WP_006095826.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  MA06_RS31450 - 1057066..1057230 (-) 165 WP_003199904.1 hypothetical protein -
  MA06_RS07535 (DJ92_1100) comJ 1057277..1057666 (-) 390 WP_029426889.1 competence protein ComJ -
  MA06_RS07540 (DJ92_1101) nucA/comI 1057685..1058119 (-) 435 WP_029426887.1 DNA-entry nuclease Machinery gene
  MA06_RS07545 (DJ92_1102) - 1058359..1059102 (+) 744 WP_003199901.1 DUF3967 domain-containing protein -
  MA06_RS31455 - 1059095..1059319 (+) 225 WP_180237133.1 hypothetical protein -
  MA06_RS07550 (DJ92_1103) - 1059396..1060670 (-) 1275 WP_006095828.1 HAMP domain-containing sensor histidine kinase -
  MA06_RS07555 (DJ92_1104) - 1060981..1061181 (+) 201 WP_003199899.1 hypothetical protein -
  MA06_RS07560 (DJ92_1105) - 1061281..1062444 (+) 1164 WP_040118968.1 aminotransferase A -
  MA06_RS07565 (DJ92_1106) - 1062458..1063039 (-) 582 Protein_1127 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16152.63 Da        Isoelectric Point: 9.2388

>NTDB_id=121749 MA06_RS07540 WP_029426887.1 1057685..1058119(-) (nucA/comI) [Bacillus pseudomycoides strain 219298]
MKQLKGIIISIIAILSILVAVYEAFIPTEPKSKKEVTYDQVLEFPKERYPETGKHIADAIKEGHSKVCTIDRSGAADRRK
LSLAPYPAKKGYDRDEWPMAMCKEGGKDAHIEYINPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=121749 MA06_RS07540 WP_029426887.1 1057685..1058119(-) (nucA/comI) [Bacillus pseudomycoides strain 219298]
ATGAAACAATTAAAAGGCATTATCATTTCGATTATTGCTATTCTTTCTATTTTAGTTGCTGTCTATGAAGCGTTTATACC
AACAGAACCAAAGAGTAAGAAAGAAGTTACATATGATCAAGTTCTAGAATTTCCAAAAGAACGTTATCCAGAGACGGGGA
AACATATAGCAGATGCGATTAAAGAAGGGCATTCTAAAGTATGTACGATTGATCGAAGTGGTGCAGCTGATAGAAGAAAG
TTGTCTCTAGCTCCATATCCAGCAAAAAAAGGGTACGATCGTGATGAATGGCCAATGGCAATGTGCAAAGAAGGTGGAAA
AGATGCGCATATTGAATATATTAACCCTGCTGATAATAGAGGCGCAGGTTCATGGGTGGGAAATAAGCTAGATAAGTACC
CAGATGGGACACGTGTGAAGTTTGAGGTTAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.333

83.333

0.528

Multiple sequence alignment