Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   U8955_RS07385 Genome accession   NZ_OY769914
Coordinates   1466162..1468120 (-) Length   652 a.a.
NCBI ID   WP_038805609.1    Uniprot ID   A0A7T3DZA7
Organism   Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1461162..1473120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8955_RS07375 (SDENT7746_07420) - 1463748..1464914 (-) 1167 WP_038805607.1 MalY/PatB family protein -
  U8955_RS07380 (SDENT7746_07425) - 1464922..1466016 (-) 1095 WP_038805608.1 cystathionine gamma-synthase -
  U8955_RS07385 (SDENT7746_07430) amiA 1466162..1468120 (-) 1959 WP_038805609.1 peptide ABC transporter substrate-binding protein Regulator
  U8955_RS07390 - 1468760..1469065 (-) 306 WP_269643438.1 LPXTG cell wall anchor domain-containing protein -
  U8955_RS07395 - 1469385..1469582 (+) 198 WP_322355176.1 hypothetical protein -
  U8955_RS07400 (SDENT7746_07445) - 1469691..1471634 (+) 1944 WP_197906187.1 chordopoxvirus G3 family protein -
  U8955_RS07405 (SDENT7746_07450) - 1472430..1472780 (+) 351 WP_269642810.1 hypothetical protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72981.33 Da        Isoelectric Point: 4.7817

>NTDB_id=1161733 U8955_RS07385 WP_038805609.1 1466162..1468120(-) (amiA) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
MKKSKAKYLTLASVVLSAGILLSACGNSASSSKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSKDGLTYTYKLRKDAKWYTYEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQESVAGLDDYINGKTTDFSTVGV
KAIDDQTVQYTLTRPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYSGPFLMKSFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALARNFTEGVYSYARLYPNSSSFEGIKEKNKDNIIYSMQDATSFYLNFNLDRKSYNFTSKTT
DIEKKSTQEAVLNKNFRQAINFAYNRTAYGAQSQGEDGATKIIRNLVVPPTFVSINGKDFGDVVSEKMVNYGQEWQGINF
ADAQDPYYNPDKAKAKFAEAKKELEAKGVQFPIHLDKTVEMTNKTEIQEISSMKQSIESVLGTENVVIDIQQLATEDYDS
SGYLAQTAAQKDFDLYNGGWSADYLDPSSYLDILNVNNGGMLQNLGLEPGEVNDKAKAVGLDTYTQMLEEANKEQDPAKR
YEKYAEVQAWLVDSALAIPNVSKGGTPSLRKTVPFSAPFSQAGNKGVESYKYLKLQDKTVTTAEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1161733 U8955_RS07385 WP_038805609.1 1466162..1468120(-) (amiA) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
ATGAAAAAGTCTAAGGCCAAGTATCTGACACTGGCAAGTGTCGTGTTAAGCGCGGGTATCCTACTAAGCGCATGTGGGAA
CTCAGCAAGTTCATCTAAAACATACAATTATGTTTACTCTAGTGATCCATCTAGTTTGAACTATCTAGCAGAGAACCGTG
CAACAACTAATGATATCGTTACCAATCTGGTAGATGGTTTGATGGAAAATGACCAATATGGTAACTATGTTCCATCTTTG
GCAGAGGATTGGACCGTTTCCAAGGACGGTTTGACTTATACCTACAAACTTCGTAAAGATGCCAAGTGGTATACATACGA
AGGTGAAGAATACGCACCTGTAACTGCTCAAGACTTTGTGACAGGTTTGAAATATGCGGCAGATAAAAAATCTGAAGCCT
TGTACTTGGTTCAAGAGTCTGTAGCAGGTTTGGATGACTATATCAACGGTAAAACAACAGACTTTTCAACTGTCGGTGTG
AAGGCGATTGATGACCAAACAGTTCAGTATACTTTGACTCGACCAGAACCTTATTGGAATTCTAAAACTACGTCCACTAT
TCTCTTCCCTGTTAATGCTGATTTCTTGAAATCAAAAGGAGATGACTTTGGTAAGGTGGATCCTTCTAGTATTTTGTACA
GTGGACCTTTCTTGATGAAGTCCTTTGTTTCAAAATCTGTTATCGAGTACAAGAAAAATCCGAACTACTGGGATGCTAAA
AATGTCTTTGTGGACGATGTGAAATTGACCTACTATGATGGAAGTGACCAAGATGCCCTAGCACGTAACTTTACAGAAGG
AGTATACAGCTACGCACGTCTCTATCCAAATAGCTCAAGTTTTGAAGGGATTAAAGAGAAGAATAAGGACAATATCATCT
ACAGCATGCAAGATGCCACTTCTTTCTACTTGAACTTTAACCTAGATAGAAAATCTTATAATTTCACTTCTAAAACGACT
GACATCGAAAAGAAATCTACCCAAGAAGCAGTTCTGAATAAAAACTTCCGCCAAGCTATCAATTTTGCCTACAACCGTAC
GGCCTATGGGGCACAATCTCAAGGGGAAGACGGAGCAACGAAGATTATTCGTAACCTAGTTGTACCTCCTACATTTGTAA
GTATCAACGGAAAAGACTTTGGTGATGTTGTTTCCGAAAAGATGGTCAACTATGGCCAAGAATGGCAAGGAATCAACTTT
GCTGATGCTCAGGATCCTTACTACAATCCTGACAAGGCTAAAGCTAAGTTTGCGGAAGCTAAGAAAGAACTAGAAGCCAA
GGGTGTTCAGTTCCCAATTCACTTGGATAAGACTGTTGAAATGACCAATAAGACAGAAATTCAAGAAATTAGCTCAATGA
AGCAATCCATCGAATCTGTTCTTGGAACTGAGAACGTGGTTATCGATATCCAACAGTTGGCAACAGAGGATTATGATAGC
TCTGGTTATTTAGCTCAGACAGCAGCCCAGAAGGATTTTGACCTATACAATGGTGGTTGGAGTGCGGACTACTTGGATCC
ATCAAGCTATCTTGATATCTTAAATGTCAATAACGGTGGTATGTTGCAAAACCTTGGTCTAGAACCAGGTGAAGTCAATG
ACAAGGCCAAGGCAGTTGGACTTGATACCTACACTCAAATGTTGGAAGAAGCCAATAAAGAGCAAGATCCAGCAAAACGT
TATGAAAAATATGCTGAAGTTCAAGCTTGGCTCGTTGATAGCGCCCTTGCAATTCCAAACGTTTCTAAGGGTGGAACACC
TAGCTTGAGAAAGACAGTTCCATTCTCTGCACCATTCTCACAAGCTGGAAATAAGGGTGTCGAATCATACAAGTACCTCA
AGTTACAAGATAAGACTGTGACGACTGCTGAGTATGAAAAAGCTAAAGAAAAATGGCTGAAAGAAAAAGAAGAGTCAAAT
AAAAAAGCCCAAGAAGAATTGGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3DZA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.319

100

0.558
  amiA3 Streptococcus thermophilus LMG 18311

55.235

100

0.558
  amiA3 Streptococcus thermophilus LMD-9

55.235

100

0.558

Multiple sequence alignment