Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   QPK16_RS25470 Genome accession   NZ_OX638610
Coordinates   5504405..5507164 (-) Length   919 a.a.
NCBI ID   WP_043096193.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 3541 isolate 3541     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5499405..5512164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK16_RS25445 (JCHGIK_26685) - 5499711..5500370 (-) 660 WP_003147893.1 SPOR domain-containing protein -
  QPK16_RS25450 (JCHGIK_26690) folC 5500374..5501663 (-) 1290 WP_003115014.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  QPK16_RS25455 (JCHGIK_26695) accD 5501660..5502532 (-) 873 WP_003104199.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  QPK16_RS25460 (JCHGIK_26700) - 5502801..5503436 (-) 636 WP_016852648.1 phosphoribosylanthranilate isomerase -
  QPK16_RS25465 (JCHGIK_26705) truA 5503526..5504383 (-) 858 WP_003091390.1 tRNA pseudouridine(38-40) synthase TruA -
  QPK16_RS25470 (JCHGIK_26710) fimV 5504405..5507164 (-) 2760 WP_043096193.1 motility hub landmark protein FimV Machinery gene
  QPK16_RS25475 (JCHGIK_26715) - 5507333..5508343 (-) 1011 WP_043096192.1 aspartate-semialdehyde dehydrogenase -
  QPK16_RS25480 (JCHGIK_26720) asd 5508445..5509557 (-) 1113 WP_043096191.1 aspartate-semialdehyde dehydrogenase -
  QPK16_RS25485 (JCHGIK_26725) leuB 5509627..5510709 (-) 1083 WP_003091395.1 3-isopropylmalate dehydrogenase -
  QPK16_RS25490 (JCHGIK_26730) - 5510768..5511529 (-) 762 WP_003115017.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 919 a.a.        Molecular weight: 96919.13 Da        Isoelectric Point: 3.9493

>NTDB_id=1160179 QPK16_RS25470 WP_043096193.1 5504405..5507164(-) (fimV) [Pseudomonas aeruginosa strain 3541 isolate 3541]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQ
APTPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASKGAEKGGKGDSKAIADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGT
PAAAAPTSAPAGEAPAAPAQPPVAPPPAPAAEKPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVL
LMILSRRNAQKEKEEAQAFAADAGEEQEDALDLGKDGFDDLTLDEPEPQVAAAAPQVEKTTAQTSDALGEADIYIAYGRF
NQASELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQ
DELDSFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLGGDDVQADLKSDSGALDDLTLDSDLDLAVSTPADKPVDDL
DFGLDFAELAETPSQPKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDAEAAEEPALSLPDDFDLSL
ADEPTEPAAPEKGEDSFAAQLDEVSAQLDELASNLDEPKSATPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLA
RAYIDMGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2760 bp        

>NTDB_id=1160179 QPK16_RS25470 WP_043096193.1 5504405..5507164(-) (fimV) [Pseudomonas aeruginosa strain 3541 isolate 3541]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCGAAGCCGGTGCAGGAGCCCTA
CCTGAACTTCCTGGTCCAGGTGCTTTGGCCGAACGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAG
GCTCCGACTCCGGTGCGTACCACCGCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGAT
CGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAGCTGAATCCGGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCTGGCGC
CAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAACCTGCGCCTGG
TGTCTGGCGAGGGCAAGGCCAGTAAGGGTGCCGAGAAGGGCGGGAAGGGCGACAGCAAGGCGATCGCCGATACCCTGGCG
GTGACCAAGGAAAGCCTCGACAGCACTCGCCGCGAGAACGAAGAACTGCAGAGTCGCATGCAGGATCTGCAGAGCCAACT
GGACAAGCTGCAGAAGTTGATCCAGCTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGG
GCGCAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCGGCCGCGCAGGCGCCGGCTCAGCCCGGGACT
CCTGCTGCGGCAGCGCCGACTTCTGCTCCAGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCC
CGCGCCAGCTGCCGAGAAGCCTCCGGCACCTGCCGTTCCGGCGCCCGCTCCGGTACAGGCGGCAGAGCAGCCGGCACCGA
GCTTCCTCGACGAACTGCTGGCCAACCCGCTGTGGTTGGCGGTGATCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTG
CTGATGATCCTGTCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCCGCGGATGCCGGCGAGGAACA
GGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAGCCGCAGGTCGCAGCCGCTG
CGCCGCAGGTCGAGAAGACCACCGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTC
AACCAGGCCTCCGAACTGTTGCAGAACGCCATCTACGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGT
CTATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGG
TCGAGCAGCTCAAGTCGCGCTATCCGGCAATGGTCGCGGTCGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAG
GACGAGCTGGATAGCTTCAGCCTCGACGACCTGTCGCTCGACGACAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACA
GGATCTCGACGACGCCTTCGACCTGAGCCTGGACGACCTGGGCGGCGACGACGTGCAGGCCGACCTCAAGTCCGACAGCG
GGGCGCTGGACGACCTGACCCTGGACAGCGATCTGGACCTGGCGGTCTCGACCCCGGCGGACAAGCCTGTCGACGATCTC
GACTTCGGCCTGGATTTCGCGGAGTTGGCAGAGACTCCGAGCCAACCCAAGCATGACGATCTGGGCGATTTCTCCCTGGA
TCTCGATGCGCCGGAAGACAAGCTTTCGGACGACGACTTCCTGCTTTCGCTGAACGACGAAGTGCCCGCCGCGGCGCCCG
CCGACAACGAATTCACCCTCGATGCCGAGGCTGCCGAAGAGCCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTG
GCCGACGAGCCGACGGAGCCGGCCGCTCCGGAGAAGGGCGAGGACAGTTTCGCCGCCCAGTTGGACGAGGTGAGTGCGCA
GTTGGACGAGTTGGCCAGCAACCTTGACGAGCCGAAGAGCGCGACGCCGAGTTTCTCCGCCGAAGATGCAGCGGTCGCCT
CCGCCCTGGACGGAGACGCCGACGATGACTTCGACTTCCTCTCCGGTGCCGACGAAGCGGCGACCAAGCTGGATCTGGCT
CGCGCCTACATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGTAACGACAGCCA
GCAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

98.803

100

0.988

Multiple sequence alignment