Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OOL12_RS08085 Genome accession   NZ_OX344719
Coordinates   1574720..1575289 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST20190863 isolate ST20190863     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1569720..1580289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOL12_RS08045 - 1570194..1570802 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  OOL12_RS08050 rplL 1570977..1571345 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OOL12_RS08055 rplJ 1571388..1571888 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  OOL12_RS08060 rplA 1572160..1572852 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  OOL12_RS08065 rplK 1573060..1573482 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  OOL12_RS08070 nusG 1573663..1574211 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OOL12_RS08075 secE 1574224..1574406 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  OOL12_RS08080 rpmG 1574462..1574605 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  OOL12_RS08085 sigH 1574720..1575289 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  OOL12_RS08090 - 1575370..1575894 (-) 525 WP_000664738.1 NYN domain-containing protein -
  OOL12_RS08095 rlmB 1575894..1576640 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OOL12_RS08100 - 1576648..1577052 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  OOL12_RS08105 cysS 1577045..1578445 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  OOL12_RS08110 cysE 1578429..1579076 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=1154843 OOL12_RS08085 WP_000872873.1 1574720..1575289(-) (sigH) [Staphylococcus aureus strain ST20190863 isolate ST20190863]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1154843 OOL12_RS08085 WP_000872873.1 1574720..1575289(-) (sigH) [Staphylococcus aureus strain ST20190863 isolate ST20190863]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment