Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE38_RS11960 Genome accession   NZ_LT992477
Coordinates   2359241..2359636 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 22_LA_562     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2354241..2364636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE38_RS11925 - 2355410..2355814 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  DXE38_RS11940 - 2356467..2356700 (+) 234 WP_000384523.1 DUF1146 family protein -
  DXE38_RS11945 murA 2356811..2358076 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DXE38_RS11950 fabZ 2358110..2358550 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DXE38_RS11955 - 2358607..2359047 (-) 441 WP_000846746.1 YwpF-like family protein -
  DXE38_RS11960 ssb 2359241..2359636 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DXE38_RS11965 sceD 2360025..2360720 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  DXE38_RS11970 tenA 2361107..2361796 (+) 690 WP_000396068.1 thiaminase II -
  DXE38_RS11975 thiD 2361789..2362619 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DXE38_RS11980 thiM 2362603..2363394 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  DXE38_RS11985 thiE 2363396..2364037 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1150143 DXE38_RS11960 WP_000932694.1 2359241..2359636(+) (ssb) [Staphylococcus aureus isolate 22_LA_562]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1150143 DXE38_RS11960 WP_000932694.1 2359241..2359636(+) (ssb) [Staphylococcus aureus isolate 22_LA_562]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment