Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DG022_RS03830 Genome accession   NZ_LT963436
Coordinates   799361..799780 (+) Length   139 a.a.
NCBI ID   WP_011302684.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 794361..804780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG022_RS03800 atpD 794477..795889 (+) 1413 WP_002482726.1 F0F1 ATP synthase subunit beta -
  DG022_RS03805 - 795909..796313 (+) 405 WP_002482727.1 F0F1 ATP synthase subunit epsilon -
  DG022_RS03810 - 796575..796808 (+) 234 WP_011302682.1 DUF1146 family protein -
  DG022_RS03815 murA 796915..798180 (+) 1266 WP_078073319.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DG022_RS03820 fabZ 798235..798672 (+) 438 WP_002482729.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DG022_RS03825 - 798730..799170 (-) 441 WP_002482730.1 YwpF-like family protein -
  DG022_RS03830 ssb 799361..799780 (+) 420 WP_011302684.1 single-stranded DNA-binding protein Machinery gene
  DG022_RS03835 - 800206..800697 (+) 492 Protein_764 transglycosylase -
  DG022_RS03840 tenA 801007..801696 (+) 690 WP_047503194.1 thiaminase II -
  DG022_RS03845 thiD 801689..802510 (+) 822 WP_047503192.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DG022_RS03850 thiM 802503..803294 (+) 792 WP_047503196.1 hydroxyethylthiazole kinase -
  DG022_RS03855 thiE 803294..803932 (+) 639 WP_011302689.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16059.43 Da        Isoelectric Point: 7.7651

>NTDB_id=1148898 DG022_RS03830 WP_011302684.1 799361..799780(+) (ssb) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
MINNIVIVGRLTKDPKIYDKEEKKLATFCVAVSRNYKDKNQTPVCDYLFCKAFGKMATNIEKYTKQGSLVGITGQMQSHK
YEKEGQTHFVSEILIESIKFMSPQNKDKNDLLFEPFPLEHSQNAFKDINVQNNDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=1148898 DG022_RS03830 WP_011302684.1 799361..799780(+) (ssb) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
ATGATTAATAACATTGTTATCGTAGGGCGACTAACTAAGGACCCTAAAATATATGATAAGGAGGAGAAAAAATTAGCTAC
ATTTTGTGTAGCTGTATCAAGGAACTATAAAGATAAGAATCAAACCCCGGTATGTGATTATTTATTTTGTAAAGCATTTG
GAAAAATGGCAACAAACATTGAGAAATATACGAAGCAAGGCTCACTTGTAGGTATAACAGGCCAAATGCAATCACATAAA
TATGAAAAAGAAGGTCAGACGCATTTTGTATCAGAAATACTTATTGAATCAATTAAATTCATGTCTCCACAAAACAAAGA
TAAAAATGATTTACTTTTTGAACCATTCCCGCTAGAGCATTCCCAAAATGCATTTAAAGACATTAACGTACAAAATAATG
ATATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

60.87

99.281

0.604
  ssb Staphylococcus aureus MW2

60.145

99.281

0.597

Multiple sequence alignment