Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   MFPB16_RS08880 Genome accession   NZ_LT960788
Coordinates   1771069..1771629 (-) Length   186 a.a.
NCBI ID   WP_099960398.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain MFPB16A1401     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1766069..1776629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MFPB16_RS08850 (MFPB16_1749) rplA 1767356..1768045 (-) 690 WP_016265663.1 50S ribosomal protein L1 -
  MFPB16_RS08855 (MFPB16_1750) rplK 1768144..1768569 (-) 426 WP_004270859.1 50S ribosomal protein L11 -
  MFPB16_RS08860 (MFPB16_1751) - 1768695..1769558 (-) 864 WP_226474434.1 alpha/beta fold hydrolase -
  MFPB16_RS08865 (MFPB16_1752) nusG 1769959..1770507 (-) 549 WP_011375364.1 transcription termination/antitermination protein NusG -
  MFPB16_RS08870 (MFPB16_1753) secE 1770605..1770784 (-) 180 WP_011375365.1 preprotein translocase subunit SecE -
  MFPB16_RS08875 (MFPB16_1754) rpmG 1770794..1770943 (-) 150 WP_011375366.1 50S ribosomal protein L33 -
  MFPB16_RS08880 (MFPB16_1755) sigH 1771069..1771629 (-) 561 WP_099960398.1 sigma-70 family RNA polymerase sigma factor Regulator
  MFPB16_RS08885 (MFPB16_1756) - 1771707..1772240 (-) 534 WP_016265667.1 NYN domain-containing protein -
  MFPB16_RS08890 (MFPB16_1757) rlmB 1772244..1773131 (-) 888 WP_011375369.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MFPB16_RS08895 (MFPB16_1758) - 1773118..1773525 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  MFPB16_RS08900 (MFPB16_1759) cysS 1773522..1774928 (-) 1407 WP_016265668.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22098.27 Da        Isoelectric Point: 6.6722

>NTDB_id=1148482 MFPB16_RS08880 WP_099960398.1 1771069..1771629(-) (sigH) [Latilactobacillus sakei strain MFPB16A1401]
MEQTKRDELLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNLLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVLFRVLTGQLSIDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=1148482 MFPB16_RS08880 WP_099960398.1 1771069..1771629(-) (sigH) [Latilactobacillus sakei strain MFPB16A1401]
ATGGAACAAACAAAGCGCGACGAACTGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAATGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATTTACTACGACGAGAACTCGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGGCCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGAGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTTGTTTCGGGTGCTGACCGGGCAGCTTTCAATTGATGAAGCTTGTTGCCAACTC
GATTGTACGATTGACCAGTTGAAACGAGGCCAATCAAGGTGCCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

97.312

100

0.973

Multiple sequence alignment