Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   BQ8897_RS03125 Genome accession   NZ_LT714196
Coordinates   524890..525963 (+) Length   357 a.a.
NCBI ID   WP_000790649.1    Uniprot ID   A0AB38VS22
Organism   Streptococcus agalactiae isolate BM110     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 519890..530963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ8897_RS03095 (BQ8897_BM110_00589) - 520781..521845 (+) 1065 WP_000021310.1 MmcQ/YjbR family DNA-binding protein -
  BQ8897_RS03100 (BQ8897_BM110_00590) asnA 521960..522952 (+) 993 WP_000748010.1 aspartate--ammonia ligase -
  BQ8897_RS03105 (BQ8897_BM110_00591) - 522997..523446 (-) 450 WP_000592264.1 bacteriocin transport accessory protein -
  BQ8897_RS03110 (BQ8897_BM110_00592) rsmD 523577..524116 (+) 540 WP_001873924.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BQ8897_RS03115 (BQ8897_BM110_00593) - 524128..524418 (+) 291 WP_000384889.1 hypothetical protein -
  BQ8897_RS03120 (BQ8897_BM110_00594) coaD 524415..524900 (+) 486 WP_000161888.1 pantetheine-phosphate adenylyltransferase -
  BQ8897_RS03125 (BQ8897_BM110_00595) sepM 524890..525963 (+) 1074 WP_000790649.1 SepM family pheromone-processing serine protease Regulator
  BQ8897_RS03130 (BQ8897_BM110_00596) - 526038..527372 (+) 1335 WP_000137524.1 bifunctional metallophosphatase/5'-nucleotidase -
  BQ8897_RS03135 (BQ8897_BM110_00597) - 527441..528019 (+) 579 WP_086874269.1 YutD family protein -
  BQ8897_RS03140 (BQ8897_BM110_00598) rlmN 528070..529176 (+) 1107 WP_001124996.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  BQ8897_RS03145 (BQ8897_BM110_00599) - 529176..529691 (+) 516 WP_000919737.1 VanZ family protein -

Sequence


Protein


Download         Length: 357 a.a.        Molecular weight: 39145.34 Da        Isoelectric Point: 10.4286

>NTDB_id=1146147 BQ8897_RS03125 WP_000790649.1 524890..525963(+) (sepM) [Streptococcus agalactiae isolate BM110]
MKNKDPKRKHKSLLGLLKWWIIGFAFLLLVLASLVVRLPYYLEMPGGAYDIRSVLKVNKKADKAKGSYNFVAVSVSQATP
AQVLYAWLTPFTELSSKEETTGGFSNDDYLRINQFYMETSQNESIYQALKLANKQVSLTYKGVYVLNLAKNSTFKDRLHL
ADTVTGVNGKSFKNSSQLIKYVAALHLGDKVKVQYTSQGKKKESVGKVIKLSNGKNGIGIGLTDHTEVSSDVPVDFNTEG
VGGPSAGLMFTLAIYDQLVKEDLRKGRKIAGTGTIEQNGHVGDIGGAGLKVVSAAKKGMDIFFVPNNPIDKNAKKGKTKV
QTNYQEAKAAAKRLGTKMKIVPVQNVQQAIDYLKKTK

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=1146147 BQ8897_RS03125 WP_000790649.1 524890..525963(+) (sepM) [Streptococcus agalactiae isolate BM110]
GTGAAGAATAAAGATCCAAAAAGAAAACATAAAAGTTTGCTAGGTCTGCTTAAATGGTGGATTATAGGTTTTGCTTTTTT
ATTGTTAGTATTAGCAAGCCTTGTGGTGAGGCTACCTTATTATTTGGAAATGCCAGGTGGAGCTTATGATATCCGTTCGG
TATTGAAAGTGAATAAAAAGGCTGATAAAGCTAAGGGTTCGTACAATTTTGTAGCGGTATCTGTCAGTCAAGCAACGCCA
GCTCAGGTTCTTTATGCTTGGTTAACTCCTTTTACAGAATTATCTAGTAAAGAGGAGACAACAGGTGGCTTTAGTAATGA
CGATTATCTCAGAATTAATCAATTCTACATGGAGACTTCTCAAAATGAGTCCATCTATCAAGCTTTAAAGTTAGCTAATA
AGCAAGTATCTCTTACTTATAAAGGAGTTTATGTGCTTAACTTAGCTAAAAATTCGACATTTAAAGATAGATTACATTTA
GCTGATACAGTCACAGGAGTTAATGGCAAAAGTTTCAAAAATTCTTCTCAACTTATCAAATATGTTGCAGCTCTTCATCT
AGGTGATAAAGTAAAGGTACAATACACAAGTCAAGGTAAAAAGAAAGAATCAGTTGGTAAAGTTATTAAACTATCAAACG
GTAAAAATGGTATTGGTATCGGTTTGACAGACCATACAGAAGTATCATCTGATGTTCCTGTGGACTTTAATACTGAAGGT
GTTGGAGGACCAAGTGCAGGTTTAATGTTTACTTTAGCGATTTACGACCAATTAGTTAAAGAAGATTTACGTAAAGGACG
TAAGATTGCAGGCACTGGTACTATTGAGCAAAATGGGCATGTTGGCGATATTGGTGGAGCAGGTTTGAAAGTTGTTTCAG
CGGCTAAAAAAGGAATGGATATTTTCTTTGTTCCTAATAATCCGATCGATAAAAATGCTAAAAAAGGCAAAACAAAGGTT
CAGACGAATTATCAAGAGGCAAAAGCAGCAGCTAAGCGATTAGGTACGAAGATGAAAATTGTACCAGTTCAAAATGTTCA
GCAAGCTATTGATTATTTGAAAAAAACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

69.322

94.958

0.658


Multiple sequence alignment