Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BGLY_RS20795 Genome accession   NZ_LT603683
Coordinates   4036605..4037294 (-) Length   229 a.a.
NCBI ID   WP_046130088.1    Uniprot ID   -
Organism   Bacillus glycinifermentans isolate BGLY     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4031605..4042294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGLY_RS20760 (BGLY_4182) - 4031759..4032235 (-) 477 WP_046130082.1 flagellar protein FlgN -
  BGLY_RS20765 (BGLY_4183) flgM 4032257..4032523 (-) 267 WP_046130083.1 flagellar biosynthesis anti-sigma factor FlgM -
  BGLY_RS20770 (BGLY_4184) - 4032603..4033022 (-) 420 WP_046130084.1 TIGR03826 family flagellar region protein -
  BGLY_RS24655 - 4033080..4033768 (-) 689 Protein_4126 phosphoribosyltransferase family protein -
  BGLY_RS20780 (BGLY_4186) - 4033756..4034058 (-) 303 WP_046130085.1 late competence development ComFB family protein -
  BGLY_RS20785 (BGLY_4187) comFA 4034114..4035523 (-) 1410 WP_046130086.1 DEAD/DEAH box helicase Machinery gene
  BGLY_RS20790 (BGLY_4188) - 4035642..4036484 (-) 843 WP_065894697.1 DegV family protein -
  BGLY_RS20795 (BGLY_4189) degU 4036605..4037294 (-) 690 WP_046130088.1 two-component system response regulator DegU Regulator
  BGLY_RS20800 (BGLY_4190) degS 4037377..4038534 (-) 1158 WP_046130089.1 sensor histidine kinase Regulator
  BGLY_RS20805 (BGLY_4191) - 4038754..4039392 (+) 639 WP_046130090.1 YigZ family protein -
  BGLY_RS20810 (BGLY_4192) - 4039407..4040498 (+) 1092 WP_046130091.1 LCP family protein -
  BGLY_RS20815 (BGLY_4193) - 4040550..4041614 (-) 1065 WP_046130092.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25860.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1145007 BGLY_RS20795 WP_046130088.1 4036605..4037294(-) (degU) [Bacillus glycinifermentans isolate BGLY]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDMYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1145007 BGLY_RS20795 WP_046130088.1 4036605..4037294(-) (degU) [Bacillus glycinifermentans isolate BGLY]
GTGACTAAAGTAAATATTGTAATTATTGATGACCATCAGTTATTCCGTGAAGGAGTAAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCTGAAGGAGACGACGGTGACGAAGCGGCTCGCATTGTCGAGCACTATCATCCGGATGTAGTCA
TCATGGACATCAATATGCCGAATGTAAACGGAGTTGAAGCGACAAAACAACTTGTCGATATGTATCCGGAATCAAAGGTC
ATAATTTTATCGATCCATGATGATGAAAACTATGTGACACATGCGTTAAAAACCGGAGCACGCGGCTATCTGCTTAAAGA
GATGGATGCCGATACACTGATTGAAGCCGTAAAGGTAGTGGCTGAAGGCGGTTCTTACCTTCACCCTAAGGTTACGCACA
ATCTTGTCAACGAATTTCGCCGTCTGGCAACAAGCGGCGTGTCATCTCACGCTCAGCACGAAGTGTATCCAGAAATCCGC
AGACCTTTGCACATTCTCACAAGGCGGGAATGCGAAGTATTGCAAATGCTCGCGGACGGAAAGAGCAACCGCGGCATAGG
AGAATCTTTATTTATCAGTGAAAAAACGGTTAAAAACCACGTCAGCAACATCCTGCAGAAAATGAACGTAAACGACAGAA
CTCAAGCAGTCGTTGTGGCCATCAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.253

100

0.983

Multiple sequence alignment