Detailed information    

insolico Bioinformatically predicted

Overview


Name   pepF   Type   Regulator
Locus tag   DQM56_RS03520 Genome accession   NZ_LS483368
Coordinates   718773..720575 (+) Length   600 a.a.
NCBI ID   WP_111710453.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6176     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 684665..781620 718773..720575 within 0


Gene organization within MGE regions


Location: 684665..781620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM56_RS03375 (NCTC6176_00679) - 685351..686693 (+) 1343 WP_165627468.1 IS3 family transposase -
  DQM56_RS03380 (NCTC6176_00680) - 686766..687659 (-) 894 WP_111710925.1 helix-turn-helix domain-containing protein -
  DQM56_RS10015 (NCTC6176_00681) - 688028..688201 (+) 174 WP_012679195.1 hypothetical protein -
  DQM56_RS03385 (NCTC6176_00682) - 688247..689182 (-) 936 WP_043029490.1 dihydroorotate oxidase -
  DQM56_RS03390 (NCTC6176_00683) - 689398..690351 (+) 954 WP_012514856.1 IS30 family transposase -
  DQM56_RS03395 (NCTC6176_00684) - 690511..691206 (+) 696 WP_012515278.1 phosphoglycerate mutase -
  DQM56_RS03400 (NCTC6176_00685) - 691315..691836 (+) 522 WP_041785362.1 transcription repressor NadR -
  DQM56_RS03405 (NCTC6176_00686) - 692227..692766 (+) 540 WP_111710441.1 hypothetical protein -
  DQM56_RS03410 (NCTC6176_00687) - 692905..693675 (+) 771 WP_111710442.1 formate/nitrite transporter family protein -
  DQM56_RS03415 (NCTC6176_00688) pbp2b 693787..695841 (+) 2055 WP_111710443.1 penicillin-binding protein PBP2B -
  DQM56_RS03420 (NCTC6176_00689) recR 695853..696449 (+) 597 WP_111710444.1 recombination mediator RecR -
  DQM56_RS03425 (NCTC6176_00690) - 696789..697835 (+) 1047 WP_111692296.1 D-alanine--D-alanine ligase -
  DQM56_RS03430 (NCTC6176_00691) - 698074..699459 (+) 1386 WP_111710445.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  DQM56_RS03435 (NCTC6176_00692) - 699543..700238 (+) 696 WP_172453696.1 TIGR02206 family membrane protein -
  DQM56_RS03440 (NCTC6176_00693) - 700406..701950 (+) 1545 WP_043038790.1 peptide chain release factor 3 -
  DQM56_RS03450 (NCTC6176_00694) - 702366..703982 (+) 1617 WP_012678268.1 DEAD/DEAH box helicase -
  DQM56_RS03455 (NCTC6176_00695) - 704109..706112 (+) 2004 WP_111710448.1 KUP/HAK/KT family potassium transporter -
  DQM56_RS03460 (NCTC6176_00696) - 706332..706613 (-) 282 WP_012515291.1 GIY-YIG nuclease family protein -
  DQM56_RS03465 (NCTC6176_00697) - 706646..707413 (-) 768 WP_111689964.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DQM56_RS03470 (NCTC6176_00698) - 707531..708271 (+) 741 WP_172453697.1 lysophospholipid acyltransferase family protein -
  DQM56_RS03475 (NCTC6176_00699) - 708590..709270 (+) 681 WP_111710449.1 helix-hairpin-helix domain-containing protein -
  DQM56_RS03480 (NCTC6176_00700) - 709251..711494 (+) 2244 WP_111710450.1 DNA internalization-related competence protein ComEC/Rec2 -
  DQM56_RS03485 (NCTC6176_00701) holA 711607..712668 (+) 1062 WP_111710451.1 DNA polymerase III subunit delta -
  DQM56_RS03490 (NCTC6176_00702) sodA 712746..713351 (+) 606 WP_014622545.1 superoxide dismutase SodA -
  DQM56_RS03495 (NCTC6176_00703) - 713602..714816 (-) 1215 WP_012679212.1 DUF3114 domain-containing protein -
  DQM56_RS03500 (NCTC6176_00704) queA 714826..715854 (-) 1029 WP_043025510.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  DQM56_RS03505 (NCTC6176_00705) nagB 716122..716826 (+) 705 WP_012515299.1 glucosamine-6-phosphate deaminase -
  DQM56_RS03510 (NCTC6176_00706) - 716998..717714 (+) 717 WP_012515300.1 pseudouridine synthase -
  DQM56_RS03515 (NCTC6176_00707) - 717806..718783 (+) 978 WP_111710452.1 competence protein CoiA -
  DQM56_RS03520 (NCTC6176_00708) pepF 718773..720575 (+) 1803 WP_111710453.1 oligoendopeptidase F Regulator
  DQM56_RS03525 (NCTC6176_00709) - 720775..721332 (+) 558 WP_043030614.1 GNAT family N-acetyltransferase -
  DQM56_RS03530 (NCTC6176_00710) - 721322..721954 (+) 633 WP_111710454.1 HAD-IA family hydrolase -
  DQM56_RS03535 (NCTC6176_00711) - 722005..722643 (+) 639 WP_038674841.1 HAD family hydrolase -
  DQM56_RS03540 (NCTC6176_00712) - 722725..723432 (+) 708 WP_043030615.1 O-methyltransferase -
  DQM56_RS03545 (NCTC6176_00713) prsA 723495..724496 (+) 1002 WP_012515307.1 peptidylprolyl isomerase PrsA -
  DQM56_RS03550 (NCTC6176_00715) alaS 724854..727472 (+) 2619 WP_111710455.1 alanine--tRNA ligase -
  DQM56_RS03555 (NCTC6176_00716) - 727595..728758 (-) 1164 WP_111710456.1 DNA/RNA non-specific endonuclease -
  DQM56_RS03560 (NCTC6176_00717) - 729179..730465 (+) 1287 WP_111710457.1 polysaccharide deacetylase family protein -
  DQM56_RS03565 (NCTC6176_00718) - 730730..731824 (-) 1095 WP_043040326.1 DEAD/DEAH box helicase -
  DQM56_RS03570 (NCTC6176_00719) udk 731921..732547 (+) 627 WP_012515313.1 uridine kinase -
  DQM56_RS03575 (NCTC6176_00720) - 732570..732842 (+) 273 WP_041790519.1 DUF1294 domain-containing protein -
  DQM56_RS03580 (NCTC6176_00721) - 733022..733837 (-) 816 WP_042670334.1 PrsW family glutamic-type intramembrane protease -
  DQM56_RS03585 (NCTC6176_00722) - 733973..734470 (+) 498 WP_012678242.1 GAF domain-containing protein -
  DQM56_RS03590 (NCTC6176_00723) dnaX 734470..736146 (+) 1677 WP_111710458.1 DNA polymerase III subunit gamma/tau -
  DQM56_RS03595 (NCTC6176_00724) - 736545..736730 (+) 186 WP_014622562.1 DUF3272 family protein -
  DQM56_RS03600 (NCTC6176_00725) birA 736705..737646 (-) 942 WP_111710459.1 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA -
  DQM56_RS03605 (NCTC6176_00726) - 738174..740414 (+) 2241 WP_012678239.1 leucine-rich repeat domain-containing protein -
  DQM56_RS03610 (NCTC6176_00727) metK 740758..741963 (+) 1206 WP_111710460.1 methionine adenosyltransferase -
  DQM56_RS03615 (NCTC6176_00728) - 742370..743629 (+) 1260 WP_043052902.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DQM56_RS03620 (NCTC6176_00730) - 743810..745152 (+) 1343 WP_165627468.1 IS3 family transposase -
  DQM56_RS03625 (NCTC6176_00731) - 745480..747024 (+) 1545 WP_043038817.1 MFS transporter -
  DQM56_RS03630 (NCTC6176_00732) - 747110..748138 (+) 1029 WP_012515326.1 sugar kinase -
  DQM56_RS03635 (NCTC6176_00733) uidA 748159..749949 (+) 1791 WP_111710461.1 beta-glucuronidase -
  DQM56_RS03640 (NCTC6176_00734) - 749991..750662 (+) 672 WP_012679236.1 FadR/GntR family transcriptional regulator -
  DQM56_RS03645 (NCTC6176_00735) - 750854..751471 (+) 618 WP_042670346.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase -
  DQM56_RS03650 (NCTC6176_00736) uxaC 751499..752896 (+) 1398 WP_111710462.1 glucuronate isomerase -
  DQM56_RS03655 (NCTC6176_00737) - 753152..754246 (+) 1095 WP_012515331.1 mannonate dehydratase -
  DQM56_RS03660 (NCTC6176_00738) - 754262..755101 (+) 840 WP_111710463.1 SDR family oxidoreductase -
  DQM56_RS03665 (NCTC6176_00739) - 755367..756170 (+) 804 WP_111710464.1 HAD family hydrolase -
  DQM56_RS03670 (NCTC6176_00740) - 756294..758084 (+) 1791 WP_111710465.1 glycoside hydrolase family 3 protein -
  DQM56_RS03675 (NCTC6176_00741) - 758656..759939 (+) 1284 WP_111710466.1 albumin-binding GA domain-containing protein -
  DQM56_RS03680 (NCTC6176_00742) - 760238..760792 (+) 555 WP_012679244.1 GNAT family N-acetyltransferase -
  DQM56_RS03685 (NCTC6176_00743) spxR 760785..762068 (+) 1284 WP_012679245.1 CBS-HotDog domain-containing transcription factor SpxR -
  DQM56_RS03690 (NCTC6176_00744) - 762085..762945 (+) 861 WP_111677900.1 methionyl aminopeptidase -
  DQM56_RS03695 (NCTC6176_00745) - 762947..763885 (+) 939 WP_014622585.1 YihY/virulence factor BrkB family protein -
  DQM56_RS03700 (NCTC6176_00746) aroA 764019..765302 (+) 1284 WP_043052912.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  DQM56_RS03705 (NCTC6176_00747) - 765295..765789 (+) 495 WP_021320558.1 shikimate kinase -
  DQM56_RS03710 (NCTC6176_00748) - 765987..767417 (+) 1431 WP_042670356.1 LCP family protein -
  DQM56_RS03715 (NCTC6176_00749) rlmD 767495..768856 (+) 1362 WP_111710467.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  DQM56_RS03720 - 768823..769011 (+) 189 WP_014622638.1 hypothetical protein -
  DQM56_RS03725 (NCTC6176_00750) - 769018..769299 (+) 282 WP_012678193.1 CD1845 family protein -
  DQM56_RS10360 - 769387..769665 (+) 279 Protein_698 replication initiator protein A -
  DQM56_RS03735 (NCTC6176_00752) - 769659..770168 (+) 510 Protein_699 ATP-binding protein -
  DQM56_RS03740 (NCTC6176_00753) - 770165..770638 (+) 474 WP_014622641.1 PcfB family protein -
  DQM56_RS03745 (NCTC6176_00754) - 770635..770964 (+) 330 Protein_701 type IV secretory system conjugative DNA transfer family protein -
  DQM56_RS03750 (NCTC6176_00756) - 771024..772861 (+) 1838 Protein_702 recombinase family protein -
  DQM56_RS10080 (NCTC6176_00757) - 772954..773151 (+) 198 WP_197711785.1 transposon-encoded TnpW family protein -
  DQM56_RS03760 (NCTC6176_00758) - 773223..773543 (+) 321 WP_014622643.1 DUF3847 domain-containing protein -
  DQM56_RS03765 (NCTC6176_00759) mobQ 773783..775243 (+) 1461 WP_111710468.1 MobQ family relaxase -
  DQM56_RS03770 (NCTC6176_00760) - 775361..775777 (+) 417 WP_043052921.1 hypothetical protein -
  DQM56_RS03775 (NCTC6176_00761) - 775780..775983 (+) 204 WP_021675795.1 helix-turn-helix transcriptional regulator -
  DQM56_RS03780 (NCTC6176_00762) - 776086..776250 (+) 165 WP_043052922.1 transposon-encoded TnpW family protein -
  DQM56_RS03785 (NCTC6176_00763) - 776292..777011 (+) 720 Protein_709 VirD4-like conjugal transfer protein, CD1115 family -
  DQM56_RS03790 (NCTC6176_00765) ltrA 777820..779730 (+) 1911 WP_111710469.1 group II intron reverse transcriptase/maturase -
  DQM56_RS03795 - 779833..780342 (+) 510 Protein_711 type IV secretory system conjugative DNA transfer family protein -
  DQM56_RS03800 (NCTC6176_00767) - 780423..780971 (+) 549 WP_111710471.1 DUF6609 family protein -
  DQM56_RS03805 (NCTC6176_00768) - 781018..781236 (+) 219 WP_038674400.1 hypothetical protein -

Sequence


Protein


Download         Length: 600 a.a.        Molecular weight: 68969.62 Da        Isoelectric Point: 4.5606

>NTDB_id=1138892 DQM56_RS03520 WP_111710453.1 718773..720575(+) (pepF) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MTDNRSHLEEKYTWDLSTIFATDAAWETEADSLSAAIEAARQQAGHLLDSSSSLLDITELHLELARRVEKLYVYASMKND
QDTTVAKYQEYQAKASGIYAKFSEAFSFYEPEFMALSQETYQAFLAEKPELAVYDHFFDKLFKAREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIAFPIVTNDKGEEVELTHGNFISLMESKDRTVRQAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYASARQAAMSANFIPEAVYDTLLETVNKHLPLLHRYLKLRQEVLGLDDLKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGQDYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSEY
LNNLYADLNEKYYGLKKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQEDIDHYLTYLKSGNSDYPL
EVIAKAGVDMGKGDYLEAAFKVFEERLTELEDLVARGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1138892 DQM56_RS03520 WP_111710453.1 718773..720575(+) (pepF) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATGACAGATAATCGTAGTCATCTAGAGGAAAAGTACACTTGGGATTTAAGCACTATTTTTGCAACAGACGCAGCTTGGGA
GACAGAAGCAGATAGCCTGTCAGCAGCTATTGAGGCTGCAAGACAGCAGGCTGGGCATTTGTTGGATTCAAGCAGCAGTC
TCTTAGATATCACAGAGCTGCATTTGGAGCTGGCTCGTCGTGTTGAAAAGCTTTATGTTTATGCCAGCATGAAAAACGAT
CAGGATACAACAGTTGCCAAGTATCAGGAATATCAGGCAAAGGCTTCTGGTATTTATGCTAAATTTAGCGAAGCCTTTTC
TTTTTATGAGCCAGAGTTTATGGCCTTGAGTCAAGAGACCTATCAGGCCTTCTTAGCGGAGAAGCCAGAATTAGCAGTCT
ATGATCATTTCTTTGATAAATTGTTCAAGGCGCGTGAGCATGTCCTTAGTCAGGCAGAAGAAGAGCTATTAGCAGGGGCA
CAAGAAATCTTTAATGGTGCTGAGGAGACCTTTAGTATCCTAGATAATGCCGACATTGCTTTTCCTATTGTGACAAATGA
TAAGGGAGAAGAGGTTGAGCTAACACATGGTAATTTCATTAGCCTAATGGAATCTAAAGACCGTACAGTGCGTCAGGCTG
CCTATGAGGCGATGTATAGCACCTATGAGCAATTCCAGCATACCTATGCTAAAACCCTGCAAACCAATGTCAAGGTGCAA
AATTATAAGGCACGTGTCCATAAGTATGCTTCAGCCCGTCAGGCAGCTATGTCAGCCAACTTTATTCCAGAGGCTGTTTA
CGATACCCTACTAGAAACCGTTAATAAGCATTTACCGCTGCTTCATCGTTACCTGAAGCTGCGTCAAGAGGTGCTTGGCT
TAGATGATCTAAAGATGTACGATGTTTATACTCCTTTATCTGAGACAGACCTTGCTATTGGTTATGATGAGGCCCTAGAA
AAAGCAGAGAAGGTTTTGGCTGTTTTTGGTCAGGATTATTCAGAGCGTGTTCATCGTGCCTTTACGGAGCGTTGGATTGA
TGTGCATGTCAATAAGGGCAAACGCTCAGGAGCTTACTCTGGTGGTTCCTATGATACCAATGCCTTTATGCTCTTAAATT
GGCAAGACACCCTTGATAACCTCTATACTTTGGTGCATGAGACAGGCCATAGCCTGCATTCAACCTTTACGCGTGAAACA
CAGCCTTACGTGTATGGAGATTACAGCATTTTCCTAGCTGAGATTGCCTCAACGACGAATGAAAACATCATGACTGAGGC
CTTGCTAAATGAGGTAGAGGACGACAAGGAGCGCTTTGCTATTTTGAACCATTACCTAGATGGTTTTCGTGGAACGGTTT
TCCGTCAAACACAGTTTGCTGAGTTTGAGCATGCTATTCATCAGGCGGATCAAAATGGCGAGGTGTTAACAAGTGAATAC
CTCAATAATCTCTATGCTGATTTAAACGAAAAATATTATGGCTTAAAAAAAGAGGACAACCATTTTATCCAGTATGAGTG
GGCTCGCATTCCGCATTTCTATTACAATTATTATGTCTACCAGTATGCAACAGGCTTTGCAGCAGCGAGCTATTTGGCTG
ATAAGATTGTTCATGGCACACAAGAGGATATTGATCATTACTTGACCTACCTCAAGTCTGGAAATTCAGATTACCCACTT
GAAGTGATTGCTAAGGCTGGGGTTGATATGGGTAAGGGTGATTACCTCGAAGCAGCCTTTAAGGTCTTTGAAGAGCGCTT
GACAGAGCTAGAGGACTTAGTGGCAAGAGGGGCTCATCTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

73

100

0.73


Multiple sequence alignment