Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL89_RS13235 Genome accession   NZ_LS483313
Coordinates   2732610..2733128 (-) Length   172 a.a.
NCBI ID   WP_002480323.1    Uniprot ID   -
Organism   Staphylococcus simulans strain NCTC11046     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2727610..2738128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL89_RS13205 (NCTC11046_02706) - 2727722..2728345 (+) 624 WP_103363932.1 NDxxF motif lipoprotein -
  DQL89_RS13210 (NCTC11046_02707) - 2728412..2728852 (-) 441 WP_070864415.1 carboxymuconolactone decarboxylase family protein -
  DQL89_RS13215 (NCTC11046_02708) - 2729011..2730177 (+) 1167 WP_023014893.1 ArgE/DapE family deacylase -
  DQL89_RS13220 (NCTC11046_02709) - 2730234..2730821 (-) 588 WP_103363933.1 histidine phosphatase family protein -
  DQL89_RS13225 (NCTC11046_02710) - 2731158..2731769 (-) 612 WP_061054960.1 hypothetical protein -
  DQL89_RS13230 (NCTC11046_02711) rpsR 2732314..2732556 (-) 243 WP_002480324.1 30S ribosomal protein S18 -
  DQL89_RS13235 (NCTC11046_02712) ssbA 2732610..2733128 (-) 519 WP_002480323.1 single-stranded DNA-binding protein Machinery gene
  DQL89_RS13240 (NCTC11046_02713) rpsF 2733150..2733446 (-) 297 WP_002480322.1 30S ribosomal protein S6 -
  DQL89_RS13245 (NCTC11046_02714) - 2733608..2734591 (-) 984 WP_103363935.1 thermonuclease family protein -
  DQL89_RS13250 (NCTC11046_02715) - 2734745..2735002 (+) 258 WP_002480320.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  DQL89_RS13255 (NCTC11046_02716) - 2734996..2735334 (+) 339 WP_103363934.1 type II toxin-antitoxin system PemK/MazF family toxin -
  DQL89_RS13260 (NCTC11046_02717) argF 2735610..2736614 (+) 1005 WP_023014888.1 ornithine carbamoyltransferase -
  DQL89_RS13850 - 2736702..2736851 (-) 150 WP_103364078.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19044.65 Da        Isoelectric Point: 5.1953

>NTDB_id=1135995 DQL89_RS13235 WP_002480323.1 2732610..2733128(-) (ssbA) [Staphylococcus simulans strain NCTC11046]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVSNYLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHGQQSGGNNQFQSYGQNYGGQQQGQNTSSYQNNNSSNAGQSDNPFANTN
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1135995 DQL89_RS13235 WP_002480323.1 2732610..2733128(-) (ssbA) [Staphylococcus simulans strain NCTC11046]
ATGATTAACAGAGTTGTATTAGTAGGCCGTTTAACTAAGGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACTCTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCGGACTTTATTAACTGTGTTGTTT
TTAGAAAACAAGCAGAAAACGTAAGCAATTACTTGTTTAAAGGAAGTCTTGCAGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGACGCCGTATCTTTGTTACTGAAGTTGTATGTGACAGTGTTCAATTCCTTGAACCAAAATC
ACAAAACCAACGTCATGGCCAACAATCTGGCGGTAATAACCAATTCCAGAGCTATGGTCAAAACTATGGTGGTCAACAAC
AAGGACAAAATACGTCATCTTATCAAAACAACAATTCATCCAACGCTGGTCAATCAGACAATCCATTCGCAAATACGAAC
GGACCTATTGACATCAGTGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.221

100

0.634
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

100

0.576
  ssb Glaesserella parasuis strain SC1401

35.326

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

63.953

0.372
  ssb Vibrio cholerae strain A1552

34.831

100

0.36

Multiple sequence alignment