Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   DQL80_RS04900 Genome accession   NZ_LS483302
Coordinates   971140..972126 (+) Length   328 a.a.
NCBI ID   WP_111680208.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC8726     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 966140..977126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL80_RS04880 (NCTC8726_00927) - 966576..968222 (+) 1647 WP_111679979.1 IS1182-like element ISSau3 family transposase -
  DQL80_RS04885 (NCTC8726_00928) trpS 968250..969239 (-) 990 WP_111680207.1 tryptophan--tRNA ligase -
  DQL80_RS04890 (NCTC8726_00929) spxA 969534..969929 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  DQL80_RS04895 (NCTC8726_00930) mecA 970300..971019 (+) 720 WP_001217728.1 adaptor protein MecA -
  DQL80_RS04900 (NCTC8726_00931) coiA 971140..972126 (+) 987 WP_111680208.1 competence protein CoiA Machinery gene
  DQL80_RS04905 (NCTC8726_00932) pepF 972174..973982 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  DQL80_RS04910 (NCTC8726_00935) yjbH 974442..975248 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  DQL80_RS04915 (NCTC8726_00936) - 975271..975636 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  DQL80_RS04920 (NCTC8726_00937) - 975740..976333 (-) 594 WP_000224615.1 CYTH domain-containing protein -
  DQL80_RS04925 (NCTC8726_00938) - 976519..976866 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38762.41 Da        Isoelectric Point: 9.7132

>NTDB_id=1135591 DQL80_RS04900 WP_111680208.1 971140..972126(+) (coiA) [Staphylococcus aureus strain NCTC8726]
MLVALNEEKERVLATTALRKIKYFCPVCGKQVILKRGLKVISHFAHKHLTEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPILYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSIFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSNS
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1135591 DQL80_RS04900 WP_111680208.1 971140..972126(+) (coiA) [Staphylococcus aureus strain NCTC8726]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGATAAAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAACGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAACCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCTTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATATTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATACTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAAATAGT
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

95.732

100

0.957
  coiA Staphylococcus aureus MW2

95.427

100

0.954

Multiple sequence alignment