Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   DQL88_RS02985 Genome accession   NZ_LS483301
Coordinates   587559..588128 (+) Length   189 a.a.
NCBI ID   WP_061642116.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC13394     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 582559..593128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL88_RS02960 (NCTC13394_00545) cysE 583772..584419 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  DQL88_RS02965 (NCTC13394_00546) cysS 584403..585803 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  DQL88_RS02970 (NCTC13394_00547) - 585796..586200 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  DQL88_RS02975 (NCTC13394_00548) rlmB 586208..586954 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DQL88_RS02980 (NCTC13394_00549) - 586954..587478 (+) 525 WP_000664738.1 NYN domain-containing protein -
  DQL88_RS02985 (NCTC13394_00550) sigH 587559..588128 (+) 570 WP_061642116.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQL88_RS02990 rpmG 588243..588386 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  DQL88_RS02995 (NCTC13394_00551) secE 588442..588624 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  DQL88_RS03000 (NCTC13394_00552) nusG 588637..589185 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  DQL88_RS03005 (NCTC13394_00553) rplK 589366..589788 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  DQL88_RS03010 (NCTC13394_00554) rplA 589996..590688 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  DQL88_RS03020 (NCTC13394_00556) rplJ 590960..591460 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  DQL88_RS03025 (NCTC13394_00557) rplL 591503..591871 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  DQL88_RS03030 (NCTC13394_00558) - 592046..592654 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22970.87 Da        Isoelectric Point: 9.5313

>NTDB_id=1135546 DQL88_RS02985 WP_061642116.1 587559..588128(+) (sigH) [Staphylococcus aureus strain NCTC13394]
MKYDLTTQDSTIKRNNAINDKGFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1135546 DQL88_RS02985 WP_061642116.1 587559..588128(+) (sigH) [Staphylococcus aureus strain NCTC13394]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGGCTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979

Multiple sequence alignment