Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | BKMNNEJI_RS05185 | Genome accession | NZ_LR822061 |
| Coordinates | 1011162..1011587 (-) | Length | 141 a.a. |
| NCBI ID | WP_015978401.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus isolate HU-14 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 976585..1020206 | 1011162..1011587 | within | 0 |
Gene organization within MGE regions
Location: 976585..1020206
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BKMNNEJI_RS04925 (LJDFIFNA_00938) | - | 976585..977436 (-) | 852 | Protein_944 | SH3 domain-containing protein | - |
| BKMNNEJI_RS04930 (LJDFIFNA_00939) | - | 977748..978293 (-) | 546 | WP_000136401.1 | NUMOD4 motif-containing HNH endonuclease | - |
| BKMNNEJI_RS04935 (LJDFIFNA_00940) | - | 978356..978964 (-) | 609 | Protein_946 | CHAP domain-containing protein | - |
| BKMNNEJI_RS04940 (LJDFIFNA_00941) | - | 978945..979382 (-) | 438 | WP_000354128.1 | phage holin | - |
| BKMNNEJI_RS04945 (LJDFIFNA_00942) | - | 979437..979832 (-) | 396 | WP_031782932.1 | hypothetical protein | - |
| BKMNNEJI_RS04950 (LJDFIFNA_00943) | - | 979837..981075 (-) | 1239 | WP_000276641.1 | BppU family phage baseplate upper protein | - |
| BKMNNEJI_RS04955 (LJDFIFNA_00944) | - | 981088..982962 (-) | 1875 | WP_031782931.1 | glucosaminidase domain-containing protein | - |
| BKMNNEJI_RS04960 (LJDFIFNA_00945) | - | 983099..983398 (-) | 300 | WP_000466769.1 | DUF2951 domain-containing protein | - |
| BKMNNEJI_RS04965 (LJDFIFNA_00946) | - | 983439..983612 (-) | 174 | WP_001790193.1 | XkdX family protein | - |
| BKMNNEJI_RS04970 (LJDFIFNA_00947) | - | 983622..983999 (-) | 378 | WP_000705894.1 | DUF2977 domain-containing protein | - |
| BKMNNEJI_RS04975 (LJDFIFNA_00948) | - | 983999..985822 (-) | 1824 | WP_031879468.1 | phage baseplate upper protein | - |
| BKMNNEJI_RS04980 (LJDFIFNA_00949) | - | 985822..987720 (-) | 1899 | WP_031782926.1 | hypothetical protein | - |
| BKMNNEJI_RS04985 (LJDFIFNA_00950) | - | 987733..989619 (-) | 1887 | WP_001573307.1 | SGNH/GDSL hydrolase family protein | - |
| BKMNNEJI_RS04990 (LJDFIFNA_00951) | - | 989630..990571 (-) | 942 | WP_000560181.1 | phage tail domain-containing protein | - |
| BKMNNEJI_RS04995 (LJDFIFNA_00952) | - | 990586..993471 (-) | 2886 | WP_031783644.1 | terminase | - |
| BKMNNEJI_RS05000 (LJDFIFNA_00953) | - | 993475..993759 (-) | 285 | WP_000880587.1 | hypothetical protein | - |
| BKMNNEJI_RS05005 (LJDFIFNA_00954) | - | 993804..994310 (-) | 507 | WP_000134337.1 | tail assembly chaperone | - |
| BKMNNEJI_RS05010 (LJDFIFNA_00955) | - | 994377..994934 (-) | 558 | WP_001604157.1 | hypothetical protein | - |
| BKMNNEJI_RS05015 (LJDFIFNA_00956) | - | 994935..995360 (-) | 426 | WP_031782924.1 | DUF3168 domain-containing protein | - |
| BKMNNEJI_RS05020 (LJDFIFNA_00957) | - | 995373..995786 (-) | 414 | WP_001151328.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| BKMNNEJI_RS05025 (LJDFIFNA_00958) | - | 995773..996108 (-) | 336 | WP_031782923.1 | phage head closure protein | - |
| BKMNNEJI_RS05030 (LJDFIFNA_00959) | - | 996120..996470 (-) | 351 | WP_031782922.1 | phage head-tail adapter protein | - |
| BKMNNEJI_RS05035 (LJDFIFNA_00960) | - | 996476..996619 (-) | 144 | WP_164091316.1 | hypothetical protein | - |
| BKMNNEJI_RS05040 (LJDFIFNA_00961) | - | 996631..997545 (-) | 915 | WP_000235168.1 | phage major capsid protein | - |
| BKMNNEJI_RS05045 (LJDFIFNA_00962) | - | 997562..998146 (-) | 585 | WP_001019221.1 | DUF4355 domain-containing protein | - |
| BKMNNEJI_RS05050 (LJDFIFNA_00963) | - | 998242..999192 (-) | 951 | WP_001604161.1 | phage head morphogenesis protein | - |
| BKMNNEJI_RS05055 (LJDFIFNA_00964) | - | 999161..1000585 (-) | 1425 | WP_031783645.1 | phage portal protein | - |
| BKMNNEJI_RS05060 (LJDFIFNA_00965) | - | 1000582..1001805 (-) | 1224 | WP_031783646.1 | PBSX family phage terminase large subunit | - |
| BKMNNEJI_RS05065 (LJDFIFNA_00966) | - | 1001798..1002292 (-) | 495 | WP_000594079.1 | terminase small subunit | - |
| BKMNNEJI_RS05070 (LJDFIFNA_00967) | - | 1002645..1003046 (-) | 402 | WP_031782919.1 | hypothetical protein | - |
| BKMNNEJI_RS05075 (LJDFIFNA_00968) | rinB | 1003047..1003220 (-) | 174 | WP_031783103.1 | transcriptional activator RinB | - |
| BKMNNEJI_RS05080 (LJDFIFNA_00969) | - | 1003213..1003416 (-) | 204 | WP_001072797.1 | hypothetical protein | - |
| BKMNNEJI_RS05085 (LJDFIFNA_00970) | - | 1003413..1003607 (-) | 195 | WP_000132920.1 | hypothetical protein | - |
| BKMNNEJI_RS05090 (LJDFIFNA_00971) | - | 1003604..1003810 (-) | 207 | WP_000195785.1 | DUF1381 domain-containing protein | - |
| BKMNNEJI_RS05095 (LJDFIFNA_00972) | - | 1003847..1004377 (-) | 531 | WP_000185651.1 | dUTP diphosphatase | - |
| BKMNNEJI_RS05100 (LJDFIFNA_00973) | - | 1004370..1004552 (-) | 183 | WP_000028421.1 | hypothetical protein | - |
| BKMNNEJI_RS05105 (LJDFIFNA_00974) | - | 1004557..1004793 (-) | 237 | WP_001065079.1 | DUF1024 family protein | - |
| BKMNNEJI_RS05110 (LJDFIFNA_00975) | - | 1004786..1005094 (-) | 309 | WP_000144708.1 | hypothetical protein | - |
| BKMNNEJI_RS05115 (LJDFIFNA_00976) | - | 1005091..1005438 (-) | 348 | WP_000979209.1 | YopX family protein | - |
| BKMNNEJI_RS05120 (LJDFIFNA_00977) | - | 1005435..1005836 (-) | 402 | WP_000695759.1 | hypothetical protein | - |
| BKMNNEJI_RS05125 (LJDFIFNA_00978) | - | 1005849..1006097 (-) | 249 | WP_072466103.1 | SAV1978 family virulence-associated passenger protein | - |
| BKMNNEJI_RS05130 (LJDFIFNA_00979) | - | 1006097..1006351 (-) | 255 | WP_000022736.1 | DUF3310 domain-containing protein | - |
| BKMNNEJI_RS05135 (LJDFIFNA_RS05135) | - | 1006351..1006476 (-) | 126 | Protein_986 | SA1788 family PVL leukocidin-associated protein | - |
| BKMNNEJI_RS05140 (LJDFIFNA_00980) | - | 1006544..1006729 (-) | 186 | WP_031783102.1 | DUF3113 family protein | - |
| BKMNNEJI_RS05145 (LJDFIFNA_00981) | - | 1006729..1007136 (-) | 408 | WP_000401950.1 | RusA family crossover junction endodeoxyribonuclease | - |
| BKMNNEJI_RS05150 (LJDFIFNA_00982) | - | 1007146..1007367 (-) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| BKMNNEJI_RS05155 (LJDFIFNA_00983) | - | 1007371..1007586 (-) | 216 | WP_001024405.1 | hypothetical protein | - |
| BKMNNEJI_RS05160 (LJDFIFNA_00984) | - | 1007583..1008824 (-) | 1242 | WP_015445891.1 | DnaB helicase C-terminal domain-containing protein | - |
| BKMNNEJI_RS05165 (LJDFIFNA_00985) | - | 1008821..1009177 (-) | 357 | WP_001132243.1 | hypothetical protein | - |
| BKMNNEJI_RS05170 (LJDFIFNA_00986) | - | 1009177..1009932 (-) | 756 | WP_001037657.1 | DnaD domain protein | - |
| BKMNNEJI_RS05175 (LJDFIFNA_00987) | - | 1009925..1010599 (-) | 675 | WP_031879467.1 | putative HNHc nuclease | - |
| BKMNNEJI_RS05180 (LJDFIFNA_00988) | - | 1010600..1011151 (-) | 552 | WP_001004506.1 | NUMOD4 domain-containing protein | - |
| BKMNNEJI_RS05185 (LJDFIFNA_00989) | ssbA | 1011162..1011587 (-) | 426 | WP_015978401.1 | single-stranded DNA-binding protein | Machinery gene |
| BKMNNEJI_RS05190 (LJDFIFNA_00990) | - | 1011587..1012210 (-) | 624 | WP_000139720.1 | DUF1071 domain-containing protein | - |
| BKMNNEJI_RS05195 (LJDFIFNA_00991) | - | 1012203..1012424 (-) | 222 | WP_001077280.1 | DUF2483 family protein | - |
| BKMNNEJI_RS05200 (LJDFIFNA_00992) | - | 1012434..1012694 (-) | 261 | WP_000291089.1 | DUF1108 family protein | - |
| BKMNNEJI_RS05205 (LJDFIFNA_00993) | - | 1012788..1012949 (-) | 162 | WP_000066028.1 | DUF1270 family protein | - |
| BKMNNEJI_RS15255 (LJDFIFNA_00994) | - | 1012942..1013070 (-) | 129 | WP_001559112.1 | hypothetical protein | - |
| BKMNNEJI_RS05210 (LJDFIFNA_00995) | - | 1013129..1013359 (+) | 231 | WP_000395457.1 | hypothetical protein | - |
| BKMNNEJI_RS05215 (LJDFIFNA_00996) | - | 1013334..1013510 (-) | 177 | WP_001094935.1 | hypothetical protein | - |
| BKMNNEJI_RS05220 (LJDFIFNA_00997) | - | 1013526..1014278 (-) | 753 | WP_023487064.1 | phage antirepressor KilAC domain-containing protein | - |
| BKMNNEJI_RS05225 (LJDFIFNA_00998) | - | 1014280..1014465 (-) | 186 | WP_000933363.1 | helix-turn-helix domain-containing protein | - |
| BKMNNEJI_RS05230 (LJDFIFNA_00999) | - | 1014905..1015114 (+) | 210 | WP_000642492.1 | hypothetical protein | - |
| BKMNNEJI_RS05235 (LJDFIFNA_01000) | - | 1015104..1015247 (-) | 144 | WP_001648348.1 | hypothetical protein | - |
| BKMNNEJI_RS05240 (LJDFIFNA_01001) | - | 1015262..1015708 (-) | 447 | WP_031879465.1 | hypothetical protein | - |
| BKMNNEJI_RS05245 (LJDFIFNA_01002) | - | 1015726..1015950 (-) | 225 | WP_000333485.1 | DUF739 family protein | - |
| BKMNNEJI_RS05250 (LJDFIFNA_01003) | - | 1016112..1016492 (+) | 381 | WP_001089477.1 | helix-turn-helix domain-containing protein | - |
| BKMNNEJI_RS05255 (LJDFIFNA_01004) | - | 1016514..1016975 (+) | 462 | WP_017804659.1 | ImmA/IrrE family metallo-endopeptidase | - |
| BKMNNEJI_RS05260 (LJDFIFNA_01005) | - | 1017007..1017687 (+) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| BKMNNEJI_RS05265 (LJDFIFNA_01006) | - | 1017894..1019279 (+) | 1386 | WP_000861310.1 | recombinase family protein | - |
| BKMNNEJI_RS05270 (LJDFIFNA_01007) | rpmF | 1019396..1019569 (-) | 174 | WP_000290472.1 | 50S ribosomal protein L32 | - |
| BKMNNEJI_RS05275 (LJDFIFNA_01008) | - | 1019649..1020206 (-) | 558 | WP_000872158.1 | YceD family protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15947.45 Da Isoelectric Point: 5.8790
>NTDB_id=1132280 BKMNNEJI_RS05185 WP_015978401.1 1011162..1011587(-) (ssbA) [Staphylococcus aureus isolate HU-14]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=1132280 BKMNNEJI_RS05185 WP_015978401.1 1011162..1011587(-) (ssbA) [Staphylococcus aureus isolate HU-14]
ATGTTAAATAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
ATGTTAAATAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
74.576 |
83.688 |
0.624 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.603 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
75.177 |
0.44 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.553 |
100 |
0.426 |
| ssbA | Streptococcus mutans UA159 |
41.844 |
100 |
0.418 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.915 |
83.688 |
0.376 |