Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   FGK96_RS00245 Genome accession   NZ_LR594036
Coordinates   39060..39965 (+) Length   301 a.a.
NCBI ID   WP_138080380.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10710     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 34060..44965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS00230 (NCTC10710_00049) - 34493..35581 (-) 1089 WP_138080376.1 CHAP domain-containing protein -
  FGK96_RS00235 (NCTC10710_00050) - 35778..36209 (-) 432 WP_232045778.1 hypothetical protein -
  FGK96_RS00240 (NCTC10710_00051) purB 37665..38957 (+) 1293 WP_138080378.1 adenylosuccinate lyase -
  FGK96_RS00245 (NCTC10710_00052) comR 39060..39965 (+) 906 WP_138080380.1 helix-turn-helix transcriptional regulator Regulator
  FGK96_RS10520 (NCTC10710_00053) - 40038..40136 (+) 99 WP_220125711.1 quorum-sensing system DWW-type pheromone -
  FGK96_RS00250 (NCTC10710_00054) ruvB 40168..41166 (+) 999 WP_138080382.1 Holliday junction branch migration DNA helicase RuvB -
  FGK96_RS00255 (NCTC10710_00055) - 41445..41888 (+) 444 WP_138080384.1 low molecular weight protein-tyrosine-phosphatase -
  FGK96_RS00260 (NCTC10710_00056) - 41897..42298 (+) 402 WP_138080386.1 hypothetical protein -
  FGK96_RS00265 (NCTC10710_00057) - 42295..44073 (+) 1779 WP_138080388.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 301 a.a.        Molecular weight: 35807.66 Da        Isoelectric Point: 8.6936

>NTDB_id=1127327 FGK96_RS00245 WP_138080380.1 39060..39965(+) (comR) [Streptococcus porcinus strain NCTC10710]
MKKLGKKIQKLRLDKSLTRETICGDESELSIRQLARIEKGQSIPSLAKVLFIAKKLDLPVVELINPDCLVLPKRYKELKY
LILRRPTYTNGQNLVDREAQFDEIFEDYYATLPEEEQLIIDLLQSRFDVYQSGDTNYGKELLREYISQIRKKKSYALNDI
FLIDLYLTCGMVSNFKEELFDKGNFDCFTNKLVLLEDKLELKDLFLLNNVLLTSIAVGISIKEYQKTRILLNVCRRIMTI
TQDFQRMPIYYMYEWKYTLFYMKDSQKAYYYYRQSLIFARTLTDNYLVNRLKTSWELDNQS

Nucleotide


Download         Length: 906 bp        

>NTDB_id=1127327 FGK96_RS00245 WP_138080380.1 39060..39965(+) (comR) [Streptococcus porcinus strain NCTC10710]
ATGAAAAAGCTTGGGAAAAAGATTCAAAAATTGAGGTTGGATAAGAGTCTGACTCGTGAAACCATTTGTGGAGATGAGTC
AGAATTATCGATTCGACAACTGGCTCGTATCGAAAAAGGTCAATCTATTCCTAGTTTAGCTAAAGTCTTATTTATTGCAA
AAAAATTAGATTTACCCGTCGTTGAACTTATTAATCCAGATTGTTTGGTTTTGCCAAAACGTTATAAGGAGCTTAAATAT
CTGATTCTTAGGCGACCAACCTACACGAATGGTCAAAATTTGGTGGATCGCGAAGCTCAATTTGATGAAATATTTGAAGA
TTATTACGCGACATTGCCTGAAGAAGAGCAGCTAATTATTGATTTATTACAGTCTCGGTTTGATGTCTATCAAAGTGGTG
ACACTAATTATGGTAAAGAGTTACTCCGTGAGTATATTAGCCAAATTCGTAAGAAAAAGAGCTATGCTTTAAATGATATT
TTTTTAATAGATCTTTACTTGACTTGTGGCATGGTTTCAAACTTCAAAGAAGAATTGTTCGATAAGGGAAATTTTGATTG
TTTTACCAATAAATTAGTTCTTTTGGAAGATAAGTTAGAATTAAAAGATCTCTTTTTACTCAATAACGTTCTTCTCACCT
CCATCGCTGTAGGAATTAGTATTAAAGAATATCAGAAAACAAGGATACTTCTGAATGTCTGTCGTCGGATTATGACTATT
ACCCAAGACTTTCAGCGCATGCCTATTTATTACATGTACGAATGGAAATACACTTTATTTTATATGAAAGACTCTCAAAA
AGCTTATTATTATTACCGTCAATCCCTAATCTTTGCACGCACGCTAACAGATAATTATCTTGTTAATCGTTTAAAAACAA
GTTGGGAATTAGATAATCAATCGTAA

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(72-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus pyogenes MGAS315

49.664

99.003

0.492
  comR Streptococcus pyogenes MGAS8232

44.85

100

0.449
  comR Streptococcus mutans UA159

43.854

100

0.439
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

44.291

96.013

0.425
  comR Streptococcus suis P1/7

38.079

100

0.382
  comR Streptococcus suis 05ZYH33

38.079

100

0.382

Multiple sequence alignment