Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   FGK94_RS10495 Genome accession   NZ_LR590471
Coordinates   1294247..1294345 (-) Length   32 a.a.
NCBI ID   WP_021320241.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11854     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1289247..1299345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK94_RS06010 (NCTC11854_01232) - 1290321..1292102 (-) 1782 WP_043029239.1 acyltransferase family protein -
  FGK94_RS06015 (NCTC11854_01233) - 1292099..1292500 (-) 402 WP_012514718.1 MORN repeat-containing protein -
  FGK94_RS06020 (NCTC11854_01234) - 1292506..1292964 (-) 459 WP_012678781.1 low molecular weight protein-tyrosine-phosphatase -
  FGK94_RS06025 (NCTC11854_01235) ruvB 1293212..1294213 (-) 1002 WP_042669757.1 Holliday junction branch migration DNA helicase RuvB -
  FGK94_RS10495 (NCTC11854_01236) comS 1294247..1294345 (-) 99 WP_021320241.1 quorum-sensing system DWW-type pheromone Regulator
  FGK94_RS06030 (NCTC11854_01237) comR 1294428..1295342 (-) 915 WP_043029238.1 helix-turn-helix domain-containing protein Regulator
  FGK94_RS06035 (NCTC11854_01238) purB 1295640..1296932 (-) 1293 WP_043029241.1 adenylosuccinate lyase -
  FGK94_RS06040 (NCTC11854_01239) - 1297529..1297753 (-) 225 WP_043029237.1 hypothetical protein -
  FGK94_RS06045 (NCTC11854_01240) purK 1297768..1298841 (-) 1074 WP_043029236.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  FGK94_RS06050 (NCTC11854_01241) purE 1298828..1299316 (-) 489 WP_021320238.1 5-(carboxyamino)imidazole ribonucleotide mutase -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3937.66 Da        Isoelectric Point: 8.5430

>NTDB_id=1126911 FGK94_RS10495 WP_021320241.1 1294247..1294345(-) (comS) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
MFKKYQYYLFLAALFLLHSAQLLSDIDWWRVG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=1126911 FGK94_RS10495 WP_021320241.1 1294247..1294345(-) (comS) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
ATGTTTAAAAAATACCAATACTATCTGTTTTTAGCTGCTTTATTTCTACTTCATTCTGCCCAATTACTTAGTGATATTGA
CTGGTGGCGTGTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

51.613

96.875

0.5
  comS Streptococcus pyogenes MGAS315

37.5

100

0.375

Multiple sequence alignment