Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   EL310_RS09565 Genome accession   NZ_LR134522
Coordinates   1634930..1635628 (-) Length   232 a.a.
NCBI ID   WP_002215673.1    Uniprot ID   A0A0U1RKJ4
Organism   Neisseria meningitidis strain NCTC3372     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1629930..1640628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL310_RS09550 (NCTC3372_01612) - 1630198..1631286 (-) 1089 WP_002249745.1 peptidylprolyl isomerase -
  EL310_RS09555 (NCTC3372_01613) - 1631391..1633799 (-) 2409 WP_002245292.1 LPS-assembly protein LptD -
  EL310_RS09560 (NCTC3372_01614) amgK 1633869..1634873 (+) 1005 WP_002215675.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  EL310_RS09565 (NCTC3372_01615) dsbA1 1634930..1635628 (-) 699 WP_002215673.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  EL310_RS14035 - 1635922..1636029 (-) 108 Protein_1588 IS5/IS1182 family transposase -
  EL310_RS09575 (NCTC3372_01616) murJ 1636087..1637625 (+) 1539 WP_002245840.1 murein biosynthesis integral membrane protein MurJ -
  EL310_RS09580 (NCTC3372_01617) - 1637758..1638714 (+) 957 WP_002236650.1 YheT family hydrolase -
  EL310_RS09585 (NCTC3372_01618) trpC 1638765..1639547 (+) 783 WP_002245839.1 indole-3-glycerol phosphate synthase TrpC -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25245.84 Da        Isoelectric Point: 5.6016

>NTDB_id=1123874 EL310_RS09565 WP_002215673.1 1634930..1635628(-) (dsbA1) [Neisseria meningitidis strain NCTC3372]
MKSKHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAH

Nucleotide


Download         Length: 699 bp        

>NTDB_id=1123874 EL310_RS09565 WP_002215673.1 1634930..1635628(-) (dsbA1) [Neisseria meningitidis strain NCTC3372]
ATGAAATCCAAACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCACTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACTGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAGTTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTCGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAGAGCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCTTACGAATCTCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTCGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCACTAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U1RKJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

98.707

100

0.987
  dsbA2 Neisseria meningitidis MC58

76.882

80.172

0.616

Multiple sequence alignment