Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   EL216_RS03515 Genome accession   NZ_LR134440
Coordinates   726812..727105 (-) Length   97 a.a.
NCBI ID   WP_085390361.1    Uniprot ID   -
Organism   Neisseria animaloris strain NCTC12228     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 721812..732105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL216_RS03505 (NCTC12228_00705) - 722454..723083 (-) 630 WP_085390363.1 lytic transglycosylase domain-containing protein -
  EL216_RS03510 (NCTC12228_00706) - 723217..726411 (-) 3195 WP_126300831.1 DNA translocase FtsK -
  EL216_RS03515 (NCTC12228_00707) comE 726812..727105 (-) 294 WP_085390361.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10126.95 Da        Isoelectric Point: 10.6529

>NTDB_id=1122850 EL216_RS03515 WP_085390361.1 726812..727105(-) (comE) [Neisseria animaloris strain NCTC12228]
MKRYVLALVGLLVSAWSLAAVNINTATAEELKALPGIGPSKAAAIVEYRTQNGKFKSVDELKNVKGIGEGILSKLKVEAV
VSGHGSAKGKAQPVLKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1122850 EL216_RS03515 WP_085390361.1 726812..727105(-) (comE) [Neisseria animaloris strain NCTC12228]
ATGAAACGGTATGTATTGGCTCTGGTGGGTCTGCTGGTATCGGCGTGGTCGTTGGCGGCGGTGAACATCAATACGGCGAC
GGCGGAAGAATTGAAGGCACTGCCGGGAATCGGGCCGTCGAAGGCGGCGGCGATAGTGGAATACCGGACGCAGAACGGCA
AGTTCAAGAGTGTGGACGAGTTGAAGAATGTAAAGGGAATCGGTGAGGGGATATTGTCGAAGCTGAAAGTGGAGGCGGTG
GTATCCGGTCATGGATCGGCGAAAGGGAAGGCGCAGCCGGTGCTGAAGAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

58.947

97.938

0.577
  comE Neisseria gonorrhoeae MS11

58.947

97.938

0.577
  comE Neisseria gonorrhoeae MS11

58.947

97.938

0.577
  comE Neisseria gonorrhoeae MS11

58.947

97.938

0.577
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

88.66

0.392
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

46.341

84.536

0.392

Multiple sequence alignment