Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   EL158_RS01355 Genome accession   NZ_LR134372
Coordinates   261515..262159 (+) Length   214 a.a.
NCBI ID   WP_027303847.1    Uniprot ID   A0A3S4SMJ1
Organism   Campylobacter upsaliensis strain NCTC11541     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 256515..267159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL158_RS01330 (NCTC11541_00278) - 256550..257491 (-) 942 WP_027303842.1 OmpA family protein -
  EL158_RS01335 (NCTC11541_00279) - 257481..258848 (-) 1368 WP_027303843.1 MotA/TolQ/ExbB proton channel family protein -
  EL158_RS01340 (NCTC11541_00280) fbaA 258921..259985 (-) 1065 WP_027303844.1 class II fructose-bisphosphate aldolase -
  EL158_RS01345 (NCTC11541_00281) - 259985..260806 (-) 822 WP_027303845.1 peptidylprolyl isomerase -
  EL158_RS01350 (NCTC11541_00282) nth 260883..261518 (+) 636 WP_027303846.1 endonuclease III -
  EL158_RS01355 (NCTC11541_00283) CJE1441 261515..262159 (+) 645 WP_027303847.1 DNA/RNA non-specific endonuclease Regulator
  EL158_RS01360 (NCTC11541_00284) - 262159..262776 (+) 618 WP_027303848.1 trimeric intracellular cation channel family protein -
  EL158_RS01365 (NCTC11541_00285) - 262773..262994 (+) 222 WP_027303849.1 EexN family lipoprotein -
  EL158_RS01370 (NCTC11541_00286) - 263047..263619 (-) 573 WP_027303850.1 hypothetical protein -
  EL158_RS01375 (NCTC11541_00287) - 263710..265503 (-) 1794 WP_027303851.1 Na/Pi cotransporter family protein -
  EL158_RS01380 (NCTC11541_00288) - 265513..265947 (-) 435 WP_027303852.1 hypothetical protein -
  EL158_RS01385 (NCTC11541_00289) - 265944..266273 (-) 330 WP_027303853.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 25323.38 Da        Isoelectric Point: 9.6201

>NTDB_id=1122347 EL158_RS01355 WP_027303847.1 261515..262159(+) (CJE1441) [Campylobacter upsaliensis strain NCTC11541]
MKILILLAIFSLSLFAKYELDEEFKGYFNGLNCSIVMDKIYYINCYDYHLKGSKALAYEVKAENLVLKQLKKRPRFEEDF
ALAKKYRTRWEDYKNSSYSRGHIAPNASFSYSLASQKAVFLMSNITPQNFQINNKIWNDIEKRERELAHKFQKIAVLNLM
LYDVNPKRIKNHIAVPSFYIKIFKAKDFKECYKVPNINVLDENINTYQISCENF

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1122347 EL158_RS01355 WP_027303847.1 261515..262159(+) (CJE1441) [Campylobacter upsaliensis strain NCTC11541]
GTGAAAATTCTAATTTTACTTGCTATTTTTAGTCTTTCTCTTTTTGCAAAATATGAGCTAGATGAGGAATTTAAAGGCTA
TTTTAACGGCTTAAATTGCTCTATTGTGATGGATAAAATTTATTATATTAATTGCTATGATTATCATTTAAAAGGCTCAA
AAGCTCTAGCTTATGAAGTTAAAGCGGAAAATTTAGTCTTAAAGCAACTTAAAAAAAGACCAAGATTTGAAGAAGATTTT
GCTTTAGCGAAAAAATATAGAACTCGCTGGGAAGACTATAAAAATAGCTCTTATAGTAGAGGACATATCGCACCTAATGC
GTCTTTTAGCTATTCTTTGGCTTCACAAAAGGCTGTATTTTTGATGAGTAATATTACGCCACAAAATTTTCAAATTAACA
ATAAAATTTGGAACGATATAGAAAAAAGAGAAAGAGAGCTAGCGCACAAATTTCAAAAAATAGCCGTCTTAAACCTTATG
CTTTATGATGTAAATCCTAAACGCATTAAAAACCATATTGCCGTGCCTAGTTTTTACATTAAAATTTTTAAAGCAAAAGA
TTTTAAAGAGTGCTATAAAGTGCCTAATATTAATGTTTTAGATGAAAATATTAACACTTATCAAATTTCTTGTGAGAATT
TTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(36-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4SMJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

57.5

93.458

0.537
  CJE0566 Campylobacter jejuni RM1221

57.576

92.523

0.533

Multiple sequence alignment