Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   EL133_RS07640 Genome accession   NZ_LR134323
Coordinates   1495457..1496806 (-) Length   449 a.a.
NCBI ID   WP_006738842.1    Uniprot ID   -
Organism   Streptococcus urinalis strain NCTC13766     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1490457..1501806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS07630 (NCTC13766_01583) rnc 1493839..1494525 (-) 687 WP_006738912.1 ribonuclease III -
  EL133_RS07635 (NCTC13766_01584) vicX 1494644..1495453 (-) 810 WP_006739451.1 MBL fold metallo-hydrolase Regulator
  EL133_RS07640 (NCTC13766_01585) vicK 1495457..1496806 (-) 1350 WP_006738842.1 cell wall metabolism sensor histidine kinase VicK Regulator
  EL133_RS07645 (NCTC13766_01586) vicR 1496799..1497509 (-) 711 WP_006740362.1 response regulator YycF Regulator
  EL133_RS07650 (NCTC13766_01587) - 1497816..1498601 (+) 786 WP_006740230.1 amino acid ABC transporter ATP-binding protein -
  EL133_RS07655 (NCTC13766_01588) - 1498611..1499360 (+) 750 WP_006740471.1 transporter substrate-binding domain-containing protein -
  EL133_RS07660 (NCTC13766_01589) - 1499458..1500153 (+) 696 WP_006739051.1 amino acid ABC transporter permease -
  EL133_RS07665 (NCTC13766_01590) - 1500166..1500816 (+) 651 WP_006738599.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51662.95 Da        Isoelectric Point: 5.1935

>NTDB_id=1121540 EL133_RS07640 WP_006738842.1 1495457..1496806(-) (vicK) [Streptococcus urinalis strain NCTC13766]
MNDNIIGNLSLFELAILLLLVFVAFYFIYLAFRDYRNVKMIRTMSHKIRELIKGQYTEDITLKGDAELVELSEQLNDLSE
VFRLTHENLEQEKNRLASILAYMTDGVLATDRSGKITMINDTAQKQLNLSKEEALKLNLVDLLDSENNYTYRELVSKRPE
LAINKRNELGEFITLRIRFALNRRESGFISGLVAVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGAIK
EDVAPSFIKVSLDETNRMMRMISDLLNLSRIDNQVTRLEVEMTNFTAFITSILNRFDRIRNQHTINDKHYDIIRNYPLTS
IWVEIDNDKMTQVIDNIVNNAIKYSPDGGKITVSIKTTDTQLIVSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTG
LGLAIAKEIVKQHNGYIWAKSEYGKGSTFTIVLPYDKTSIDEEWEDDIE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1121540 EL133_RS07640 WP_006738842.1 1495457..1496806(-) (vicK) [Streptococcus urinalis strain NCTC13766]
ATGAATGACAATATTATAGGGAATTTATCGCTCTTTGAATTAGCGATTCTATTACTTCTAGTTTTTGTTGCTTTTTACTT
TATTTATCTAGCTTTTCGTGATTATCGTAACGTTAAAATGATTCGTACCATGAGTCATAAAATCAGAGAACTGATAAAGG
GTCAGTATACAGAAGATATTACTCTGAAAGGTGATGCTGAATTAGTAGAGCTATCTGAGCAGCTCAATGATTTATCAGAA
GTTTTTCGCCTAACTCATGAAAATCTAGAACAAGAGAAAAATCGATTAGCTTCTATCTTAGCTTATATGACAGATGGTGT
GCTTGCGACGGATCGCTCGGGTAAAATTACTATGATTAATGATACTGCCCAAAAGCAGCTTAATCTTAGTAAAGAAGAGG
CTCTGAAGCTAAACTTGGTTGACTTACTTGATAGTGAAAATAATTATACCTATAGAGAACTTGTTTCTAAGCGGCCTGAG
TTAGCGATTAATAAACGAAATGAACTTGGGGAATTTATTACACTTCGAATTCGTTTTGCTTTAAATAGACGCGAAAGTGG
TTTTATTTCTGGTTTAGTTGCAGTATTGCATGATACAACTGAGCAAGAAAAGGAAGAAAGGGAGCGTCGTCTCTTTGTCT
CTAATGTCAGTCATGAATTAAGGACTCCTTTGACATCTGTTAAATCTTATTTAGAAGCCTTAGATGAAGGAGCCATTAAG
GAAGATGTTGCGCCAAGTTTTATCAAAGTTTCTTTGGACGAAACAAACAGGATGATGAGAATGATTTCTGATTTGTTAAA
CCTCTCTCGTATTGATAATCAAGTCACGCGCTTAGAAGTCGAGATGACTAACTTTACAGCATTTATTACTTCTATCTTAA
ACCGATTTGATCGTATTAGAAATCAGCACACGATAAATGATAAACATTATGATATTATCAGGAATTACCCTTTAACTTCG
ATTTGGGTAGAAATTGATAATGATAAAATGACTCAAGTTATTGATAATATTGTTAATAATGCAATTAAGTATTCTCCAGA
TGGTGGTAAAATTACCGTCTCTATAAAGACAACTGATACTCAATTAATTGTTTCTATTTCAGATCAAGGATTGGGTATTC
CAAAAAAAGATTTACCTTTAATCTTTGATCGTTTTTATCGTGTTGATAAAGCTAGAAGTCGTGCTCAAGGAGGTACTGGC
TTAGGTCTTGCAATTGCAAAAGAAATTGTTAAGCAACATAATGGCTATATTTGGGCAAAGAGTGAATATGGAAAAGGCTC
TACCTTTACAATTGTCTTACCATATGATAAAACAAGTATTGATGAGGAATGGGAGGATGACATAGAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(326-436)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

PAS fold (PAS)

(95-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

73.544

91.759

0.675
  micB Streptococcus pneumoniae Cp1015

64.896

96.437

0.626

Multiple sequence alignment