Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PSAB_RS24235 Genome accession   NZ_CP004078
Coordinates   5250528..5251022 (-) Length   164 a.a.
NCBI ID   WP_025337146.1    Uniprot ID   X4ZJY3
Organism   Paenibacillus sabinae T27     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5245528..5256022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSAB_RS24220 (PSAB_24115) opp4A 5245810..5247546 (-) 1737 WP_025337143.1 oligopeptide ABC transporter substrate-binding protein -
  PSAB_RS24225 (PSAB_24120) - 5247722..5249668 (-) 1947 WP_025337144.1 endonuclease MutS2 -
  PSAB_RS24230 (PSAB_24125) rpsR 5250234..5250506 (-) 273 WP_025337145.1 30S ribosomal protein S18 -
  PSAB_RS24235 (PSAB_24130) ssbA 5250528..5251022 (-) 495 WP_025337146.1 single-stranded DNA-binding protein Machinery gene
  PSAB_RS24240 (PSAB_24135) rpsF 5251072..5251356 (-) 285 WP_025337147.1 30S ribosomal protein S6 -
  PSAB_RS24245 (PSAB_24140) - 5251576..5251773 (+) 198 WP_025337148.1 YjzC family protein -
  PSAB_RS26310 - 5252371..5252574 (-) 204 WP_051529820.1 hypothetical protein -
  PSAB_RS24255 - 5252571..5253050 (-) 480 WP_051529821.1 ABC transporter permease -
  PSAB_RS24260 (PSAB_24155) - 5253043..5253963 (-) 921 WP_025337149.1 ABC transporter ATP-binding protein -
  PSAB_RS24265 (PSAB_24160) - 5254098..5255033 (-) 936 WP_025337150.1 sensor histidine kinase -
  PSAB_RS24270 (PSAB_24165) - 5255030..5255749 (-) 720 WP_025337151.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17984.82 Da        Isoelectric Point: 4.8192

>NTDB_id=112129 PSAB_RS24235 WP_025337146.1 5250528..5251022(-) (ssbA) [Paenibacillus sabinae T27]
MLNRVILIGRLTRDPELRYTPQGVAVTQFTLAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQSRESGNASGGGDMPEPPAYGGGGRGNSGNSGFSRNNNQDPFSGDGKPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=112129 PSAB_RS24235 WP_025337146.1 5250528..5251022(-) (ssbA) [Paenibacillus sabinae T27]
ATGTTGAACCGTGTCATACTGATCGGCCGATTGACCCGTGATCCTGAGCTGCGCTATACGCCTCAAGGCGTTGCCGTAAC
CCAGTTTACGCTTGCCGTAGACCGGCCTTTTACAAGCCAGGGCGGCGAACGTGAAGCGGATTTCATTCCGGTCGTTACCT
GGAGACAGCTGGCGGAGACCTGTGCTAATTATTTGCGCAAAGGTCGGCTGACGGCGGTAGAGGGACGCATCCAAGTACGG
AATTACGAGAATAACGAAGGCAAGCGTGTATACGTCACCGAAGTTATTGCCGATAATGTCCGGTTCCTGGAATCTTCCCA
GAGCCGCGAGAGCGGAAACGCATCCGGCGGGGGGGATATGCCCGAGCCACCAGCATACGGCGGCGGCGGACGCGGAAACA
GCGGAAATAGCGGTTTCTCGCGCAACAATAATCAGGATCCCTTTTCGGGCGACGGTAAGCCGATTGATATATCGGATGAT
GATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X4ZJY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.618

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

48.824

100

0.506

Multiple sequence alignment