Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   EL143_RS02250 Genome accession   NZ_LR134313
Coordinates   471626..471922 (-) Length   98 a.a.
NCBI ID   WP_085417575.1    Uniprot ID   A0A1X3CNC3
Organism   Neisseria canis strain NCTC10296     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 466626..476922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL143_RS02240 (NCTC10296_00454) - 468532..470820 (-) 2289 WP_085415500.1 Tex family protein -
  EL143_RS02245 - 470909..471313 (+) 405 Protein_447 IS1595 family transposase -
  EL143_RS02250 (NCTC10296_00455) comE 471626..471922 (-) 297 WP_085417575.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10131.02 Da        Isoelectric Point: 10.5335

>NTDB_id=1121084 EL143_RS02250 WP_085417575.1 471626..471922(-) (comE) [Neisseria canis strain NCTC10296]
MKKLMLGVLAALSCAWSLAAVNINTATAEELKALPGIGPAKAAAIVEYRQANGAFKSVEELKKVKGIGDGIFNKLKEEAT
VSGAAKAKPAKPVQPKAK

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1121084 EL143_RS02250 WP_085417575.1 471626..471922(-) (comE) [Neisseria canis strain NCTC10296]
ATGAAAAAACTGATGTTGGGTGTGTTGGCGGCGTTGTCGTGTGCGTGGTCGCTGGCGGCGGTGAATATCAATACGGCGAC
GGCGGAGGAGTTGAAGGCGTTGCCGGGTATCGGCCCGGCGAAGGCGGCGGCGATAGTGGAATACCGTCAGGCCAACGGTG
CCTTTAAAAGTGTGGAGGAGTTGAAGAAGGTGAAGGGTATCGGGGACGGTATCTTCAATAAGCTGAAGGAAGAGGCGACG
GTGTCGGGTGCGGCGAAGGCCAAACCGGCCAAACCGGTGCAGCCCAAGGCCAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X3CNC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

60.204

100

0.602
  comE Neisseria gonorrhoeae MS11

60.204

100

0.602
  comE Neisseria gonorrhoeae MS11

60.204

100

0.602
  comE Neisseria gonorrhoeae MS11

60.204

100

0.602
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.098

83.673

0.469

Multiple sequence alignment