Detailed information NTG1120711

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: EL224_RS20885
• Genome accession: NZ_LR134299
• Coordinates: 4463872..4466085 (-)
• Length: 737 a.a.
• NCBI ID: WP_010952924.1
• Uniprot ID: Q88LN2
• Organism: Pseudomonas putida strain NCTC13186
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4458872..4471085

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL224_RS20850 (NCTC13186_04115)	murB	4459223..4460242 (-)	1020	WP_049586861.1	UDP-N-acetylmuramate dehydrogenase	-
EL224_RS20855 (NCTC13186_04116)	-	4460239..4460703 (-)	465	WP_004575950.1	low molecular weight protein-tyrosine-phosphatase	-
EL224_RS20860 (NCTC13186_04117)	kdsB	4460703..4461467 (-)	765	WP_010952928.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
EL224_RS20865 (NCTC13186_04118)	-	4461464..4461649 (-)	186	WP_003247142.1	Trm112 family protein	-
EL224_RS20870 (NCTC13186_04119)	lpxK	4461694..4462695 (-)	1002	WP_049586866.1	tetraacyldisaccharide 4'-kinase	-
EL224_RS20875 (NCTC13186_04120)	-	4462695..4463129 (-)	435	WP_010952926.1	ExbD/TolR family protein	-
EL224_RS20880 (NCTC13186_04121)	exbB	4463126..4463761 (-)	636	WP_026031862.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
EL224_RS20885 (NCTC13186_04122)	comA	4463872..4466085 (-)	2214	WP_010952924.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
EL224_RS20890 (NCTC13186_04123)	-	4466228..4466734 (+)	507	Protein_4039	DUF2062 domain-containing protein	-
EL224_RS20895 (NCTC13186_04124)	-	4466744..4467523 (-)	780	WP_010952923.1	ABC transporter permease	-
EL224_RS20900 (NCTC13186_04125)	-	4467520..4468452 (-)	933	WP_010952922.1	ABC transporter ATP-binding protein	-
EL224_RS20905 (NCTC13186_04126)	-	4468586..4469209 (-)	624	WP_010952921.1	glutathione S-transferase	-

Sequence

Protein

• Length: 737 a.a.
• Molecular weight: 79459.38 Da
• Isoelectric Point: 10.4818

>NTDB_id=1120711 EL224_RS20885 WP_010952924.1 4463872..4466085(-) (comA) [Pseudomonas putida strain NCTC13186]
MRTGMFALALGLLCLGFLPALPSVGWLITLAACAVGSLFTRVWPLGWFLLGLCWACGSAQQALDDRLATGLEGRTLWLEG
RVAGLPARTAHGVRFELEAPRSRRAELPQRLQLSWFDGAPLRAGEQWRLAVTLQRPNGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDALRQRLLMVEANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGAFFPLLVALVAVLVFEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAVGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLMLPLAGVGEALLWLAGGLLDVLFRGLALVAQQRPAWVPPALPLWAWLLVCLGVLLVLLPRGVPLRGLGGVMLLALW
VPREPVPFGQVEVWQLDVGQGLAVLLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGGLDVMVISHAHADHAGGAV
AIARGLPIKRIIGGEALVDVPLQPCASGEQWDWDGVRFSLWRWVDGQSSNDRSCVLLVEAQGERLLLAGDMEAAAERAWL
ADTEVPRIDWLQAPHHGSRSSSTEAFVRATAPRGVLISRGRNNSFGHPHVQVVERYGRHGVVMHDTAEEGALRLVLGRHG
VVEGVRGQRRFWRVRGE

Nucleotide

• Length: 2214 bp

>NTDB_id=1120711 EL224_RS20885 WP_010952924.1 4463872..4466085(-) (comA) [Pseudomonas putida strain NCTC13186]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTGCCCGCATTGCCATCGGTCGGATGGTT
GATAACCCTGGCAGCCTGCGCTGTCGGCAGCCTGTTTACCCGGGTCTGGCCGCTGGGTTGGTTTCTGCTGGGCTTGTGTT
GGGCGTGCGGGTCTGCTCAGCAGGCCCTTGATGATCGTCTGGCTACCGGCCTGGAGGGGCGCACCTTGTGGCTGGAGGGG
CGGGTGGCGGGTTTGCCGGCCCGCACTGCACACGGTGTGCGTTTCGAGCTGGAAGCGCCACGCTCGCGGCGGGCCGAACT
GCCTCAGCGCCTGCAGCTGAGCTGGTTCGACGGCGCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCCGTGACCTTGC
AGCGCCCGAACGGGCTGCTGAACCCGCATGGGCCCGACCGTGAAGCGCAGTTGCTGGCGCGACGGGTGGGGGCTACGGGT
ACGGTCAAGGCGGGGCAGTTGCTGGCGCCAGTCGCCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTGATGGTCGA
AGCCAATGGCCGGCAGGCAGCGCTGGTGGCACTGGTGCTTGGCGACGGTGCGGGCCTGGCCCGTGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGTTGGTGATTTCCGGCCAGCACATCGGCCTGGTCGCCGGTTTGCTCTATGGCCTG
GTCGCCGGGCTGGCGCGTTGGGGGCTATGGCCGGCAAGGCTACCGTGGTTACCCTGGGCCTGCGGCCTGGCCATGGCCGC
AGCGCTGGCCTACGGGTGGCTGGCTGGCGGTGGGGTGCCAGTGCAGCGGGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGTCTGCGCTTTCGCCACCTTGGCGCTTTTTTTCCGTTGCTGGTTGCACTGGTCGCTGTACTTGTCTTCGAGCCACTA
GCGGCGTTGCTGCCTGGGTTCTGGCTGTCGTTCGCCGCCGTGGCCACGCTCATCTACTGCTTCAGTGCCCGGTTGGGTGG
TTGGCGGCCCTGGCAGGCCTGGACACGAGCGCAATGGGTGATCGCCGTCGGCTTGCTACCGGTGTTGCTGGCCACCGGCT
TGCCGGTGAGCCTCAGTGCGCCGCTGGCCAACCTTGTGGCGGTGCCGTGGGTCAGCCTGGCGGTCTTGCCGTTGGCGTTG
CTGGGCACGCTGATGTTGCCGCTGGCGGGTGTTGGCGAGGCGTTGCTCTGGCTGGCAGGTGGCCTGCTGGATGTGCTGTT
CCGTGGGCTGGCGCTGGTGGCGCAGCAGCGCCCGGCATGGGTCCCGCCGGCCCTGCCGTTGTGGGCCTGGCTGCTGGTAT
GTCTGGGTGTGCTGTTGGTTTTGCTGCCCCGTGGTGTGCCGCTGCGCGGGTTGGGAGGGGTAATGCTGCTGGCGCTGTGG
GTGCCCCGGGAGCCGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGATGTTGGCCAGGGGCTGGCGGTGCTCTTGCG
TACGCGGCATCACAGCCTGCTCTACGATGCCGGGCCGGCCAGGGGGGAAAGCGACTTGGGGGAGCGAGTGGTGCTGCCAA
CCTTGCGCAAGCTGGGGGTGGGCGGCCTTGACGTGATGGTGATCAGCCATGCACATGCCGATCATGCGGGCGGGGCCGTG
GCCATTGCGCGTGGTTTGCCGATCAAGCGGATAATCGGTGGGGAAGCGCTGGTTGATGTTCCGTTGCAGCCTTGTGCCAG
TGGCGAGCAATGGGATTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGTGGACGGGCAGAGCAGTAATGACCGTTCCT
GTGTCTTGTTGGTCGAAGCGCAGGGCGAGCGCTTGCTGCTGGCGGGGGATATGGAAGCTGCTGCCGAAAGGGCCTGGCTG
GCGGACACTGAAGTGCCGCGTATCGACTGGCTGCAGGCGCCGCATCATGGCAGCCGCAGTTCGTCCACCGAGGCGTTCGT
CCGGGCTACCGCACCGCGCGGGGTATTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCACCCGCACGTGCAGGTGGTCG
AGCGGTATGGGCGGCATGGGGTGGTGATGCATGATACGGCGGAGGAGGGGGCATTGCGGTTGGTGCTGGGGCGGCATGGG
GTAGTCGAGGGGGTTAGGGGGCAGCGGCGGTTCTGGCGGGTTCGAGGGGAGTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (12-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-674)

• Competence protein (Competence) (198-464)

3D structure

• AlphaFold DB: Q88LN2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	58.587	97.965	0.574
comA	Ralstonia pseudosolanacearum GMI1000	34.821	100	0.37