Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   E0E14_RS00315 Genome accession   NZ_LR027877
Coordinates   62545..64173 (-) Length   542 a.a.
NCBI ID   WP_001186596.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate BPH3244     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 44382..65540 62545..64173 within 0


Gene organization within MGE regions


Location: 44382..65540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E14_RS00210 mecA 44382..46391 (-) 2010 WP_001801873.1 PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA -
  E0E14_RS00215 mecR1 46488..48245 (+) 1758 WP_000952923.1 beta-lactam sensor/signal transducer MecR1 -
  E0E14_RS00220 mecI 48245..48616 (+) 372 WP_130828128.1 mecA-type methicillin resistance repressor MecI -
  E0E14_RS00225 psm-mec 48701..48769 (-) 69 WP_014532405.1 phenol-soluble modulin PSM-mec -
  E0E14_RS00230 - 49103..50233 (+) 1131 WP_010922808.1 ROK family transcriptional regulator -
  E0E14_RS00235 cstB 50347..51681 (-) 1335 Protein_40 persulfide dioxygenase-sulfurtransferase CstB -
  E0E14_RS00240 - 51714..52778 (-) 1065 WP_000438836.1 DsrE/DsrF/DrsH-like family protein -
  E0E14_RS00245 cstR 52914..53174 (+) 261 WP_000220507.1 persulfide-sensing transcriptional repressor CstR -
  E0E14_RS00250 - 53174..53812 (+) 639 Protein_43 sulfite exporter TauE/SafE family protein -
  E0E14_RS00260 - 54086..54702 (-) 617 Protein_44 CadD family cadmium resistance transporter -
  E0E14_RS00265 - 54783..57197 (-) 2415 WP_116100491.1 cadmium-translocating P-type ATPase CadA -
  E0E14_RS00270 - 57190..57555 (-) 366 WP_000159127.1 ArsR/SmtB family transcription factor -
  E0E14_RS00275 - 57793..58170 (-) 378 WP_001041908.1 DUF6262 family protein -
  E0E14_RS00280 - 58177..60069 (-) 1893 WP_002485298.1 site-specific integrase -
  E0E14_RS00285 - 60264..60587 (-) 324 WP_000088091.1 JAB domain-containing protein -
  E0E14_RS00290 - 60580..60786 (-) 207 WP_001077283.1 hypothetical protein -
  E0E14_RS00295 - 60788..61309 (-) 522 WP_000836008.1 DUF1643 domain-containing protein -
  E0E14_RS00300 - 61328..61639 (-) 312 WP_000833212.1 DUF960 family protein -
  E0E14_RS00310 - 61724..62074 (-) 351 WP_000171449.1 SAUGI family uracil-DNA glycosylase inhibitor -
  E0E14_RS00315 ccrB 62545..64173 (-) 1629 WP_001186596.1 cassette chromosome recombinase CcrB Machinery gene
  E0E14_RS00320 ccrA 64194..65540 (-) 1347 WP_000816499.1 cassette chromosome recombinase CcrA Machinery gene

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62274.15 Da        Isoelectric Point: 9.7334

>NTDB_id=1115985 E0E14_RS00315 WP_001186596.1 62545..64173(-) (ccrB) [Staphylococcus aureus isolate BPH3244]
MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMNRPELQRLLKDANEGQIDSVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK
YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIVHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYD
EVSGKLHNLVKTIEDNPDLTSALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK
ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPLDEVLLSTSSLFLPQTLFLQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=1115985 E0E14_RS00315 WP_001186596.1 62545..64173(-) (ccrB) [Staphylococcus aureus isolate BPH3244]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTATAGTAT
CGATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGTTGTTGTAGATGTATACGCGGATAGAGGTA
TCTCTGGAAAATCTATGAACCGACCAGAACTACAACGTTTGTTAAAAGATGCGAACGAAGGTCAGATTGATTCTGTTATG
GTCTACAAAACAAACCGACTAGCACGTAACACTTCTGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAGCGTATGGAAGTCAATACAAGCAGTGGTAAATTGATGCTACAAATTCTAGCGAGTTTTTCAG
AATTTGAAAGAAATAATATTGTCGAAAATGTATTCATGGGTCAAACCCGACGCGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCGGATAGCAAGCATGAACTCATGATAAACCAACATGAAGCGAATATTGTCAAATA
TATATTTGAGTCATATGCTAAAGGCCACGGATATCGTAAAATTGCGAATGCACTCAATCACAAAGGATACGTGACTAAAA
AAGGAAAGCCTTTCAGTATTGGTTCAGTGACCTATATCTTATCTAATCCATTCTATGTTGGTAAAATTCAATTCGCAAAG
TACAAAGATTGGAATGAAAAGCGTCGTAAAGGGCTGAATGATAAACCAATAATAGCTGAAGGTAAGCATTCCCCTATTAT
TATTCAAGACTTATGGGATAAAGTCCAATTACGTAAAAAACAAGTCAGTCAAAAACCTCAAGTCCACGGTAAAGGAACTA
ATCTATTAACAGGTATCGTTCATTGTCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGTTATTATTCTTGCAGTAACTTCCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGT
TAGAGCTGATGTGATTGAGAAATACGTCATGGATCAAATACTCGAAATTGTCAAAAGTGATAAAGTCATTAACCAAGTCT
TAGAACGTGTCAATCAAGAAAATAAAGTCGATATTGGTGCATTGAACCACGATATCGCTTATAAACAACAACAATACGAT
GAAGTCAGCGGGAAACTCCATAATTTAGTTAAAACCATTGAAGATAATCCGGACCTAACATCTGCATTGAAAGCAACTAT
TCATCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAACTCAAACAGCAACAAAATCAAGAGAAACTAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCAATGGATAAAGCACAACTCAAA
GCATTATATCTTACAGTCATTGACCGTATTGATATTCGTAAAGACGGTAATCATAAAAAACAGTTCTACGTTACACTAAA
ACTCAATAATGAAATTATTAAACAACTTTTCAATAATACCCCTCTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACGCTCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

86.531

100

0.865

Multiple sequence alignment