Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   ABCIP7010_RS07935 Genome accession   NZ_LN865143
Coordinates   1706929..1707309 (+) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii isolate CIP70.10     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1701929..1712309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCIP7010_RS07905 (ABCIP7010_1597) kdsB 1702832..1703593 (+) 762 WP_000680704.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABCIP7010_RS07910 (ABCIP7010_1598) - 1703605..1704585 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  ABCIP7010_RS07915 (ABCIP7010_1599) - 1704597..1704938 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  ABCIP7010_RS07920 (ABCIP7010_1600) - 1704956..1705729 (+) 774 WP_000497303.1 TatD family hydrolase -
  ABCIP7010_RS07925 (ABCIP7010_1601) - 1705767..1706375 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  ABCIP7010_RS07930 (ABCIP7010_1602) - 1706385..1706939 (+) 555 WP_000841373.1 type II secretion system protein -
  ABCIP7010_RS07935 (ABCIP7010_1603) xcpV 1706929..1707309 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABCIP7010_RS07940 (ABCIP7010_1604) xcpW 1707309..1708010 (+) 702 WP_000594576.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABCIP7010_RS07945 (ABCIP7010_1605) gspK 1708010..1708969 (+) 960 WP_000301464.1 type II secretion system minor pseudopilin GspK -
  ABCIP7010_RS07950 (ABCIP7010_1606) - 1709199..1709795 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  ABCIP7010_RS07955 (ABCIP7010_1607) ung 1709846..1710559 (+) 714 WP_001177530.1 uracil-DNA glycosylase -
  ABCIP7010_RS07960 (ABCIP7010_1608) - 1710556..1711680 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  ABCIP7010_RS07965 (ABCIP7010_1609) tadA 1711687..1712190 (+) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=1114754 ABCIP7010_RS07935 WP_000836911.1 1706929..1707309(+) (xcpV) [Acinetobacter baumannii isolate CIP70.10]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1114754 ABCIP7010_RS07935 WP_000836911.1 1706929..1707309(+) (xcpV) [Acinetobacter baumannii isolate CIP70.10]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment