Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACM5XX_RS01765 Genome accession   NZ_CP183946
Coordinates   325353..325790 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain HKSSLJEBR3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 320353..330790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM5XX_RS01725 (ACM5XX_01725) - 320932..321096 (-) 165 Protein_299 molybdopterin dinucleotide binding domain-containing protein -
  ACM5XX_RS01730 (ACM5XX_01730) - 321210..322412 (+) 1203 WP_015388720.1 GTP-binding protein -
  ACM5XX_RS01735 (ACM5XX_01735) - 322477..323613 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  ACM5XX_RS01740 (ACM5XX_01740) - 323628..324062 (+) 435 WP_003156592.1 RDD family protein -
  ACM5XX_RS01745 (ACM5XX_01745) - 324179..324454 (+) 276 WP_371745793.1 YckD family protein -
  ACM5XX_RS01750 (ACM5XX_01750) - 324558..324674 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  ACM5XX_RS01755 (ACM5XX_01755) - 324673..324892 (+) 220 Protein_305 family 1 glycosylhydrolase -
  ACM5XX_RS01760 (ACM5XX_01760) nin/comJ 324933..325331 (-) 399 WP_043866822.1 competence protein ComJ Regulator
  ACM5XX_RS01765 (ACM5XX_01765) nucA/comI 325353..325790 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACM5XX_RS01770 (ACM5XX_01770) hxlB 326149..326706 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  ACM5XX_RS01775 (ACM5XX_01775) hxlA 326703..327338 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  ACM5XX_RS01780 (ACM5XX_01780) - 327570..327932 (+) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=1107208 ACM5XX_RS01765 WP_003156588.1 325353..325790(-) (nucA/comI) [Bacillus velezensis strain HKSSLJEBR3]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1107208 ACM5XX_RS01765 WP_003156588.1 325353..325790(-) (nucA/comI) [Bacillus velezensis strain HKSSLJEBR3]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment