Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ACLKM2_RS11880 Genome accession   NZ_CP183899
Coordinates   2498953..2499480 (-) Length   175 a.a.
NCBI ID   WP_005094322.1    Uniprot ID   N9MDH9
Organism   Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2493953..2504480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM2_RS11860 - 2494205..2495077 (-) 873 WP_180041094.1 hypothetical protein -
  ACLKM2_RS11865 aroB 2495090..2496169 (-) 1080 WP_244782714.1 3-dehydroquinate synthase -
  ACLKM2_RS11870 aroK 2496198..2496734 (-) 537 WP_100355174.1 shikimate kinase AroK -
  ACLKM2_RS11875 pilQ 2496771..2498936 (-) 2166 WP_286412291.1 type IV pilus secretin PilQ family protein Machinery gene
  ACLKM2_RS11880 pilP 2498953..2499480 (-) 528 WP_005094322.1 pilus assembly protein PilP Machinery gene
  ACLKM2_RS11885 comO 2499480..2500193 (-) 714 WP_005094323.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACLKM2_RS11890 comN 2500190..2500828 (-) 639 WP_005094324.1 PilN domain-containing protein Machinery gene
  ACLKM2_RS11895 pilM 2500828..2501886 (-) 1059 WP_005168888.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19268.39 Da        Isoelectric Point: 7.1659

>NTDB_id=1107057 ACLKM2_RS11880 WP_005094322.1 2498953..2499480(-) (pilP) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
MNRIKITSVLALGLVLLGCDSRIDAVNQEMANIRNQPPLPIEPAPDFMPVETFNYAAHQIKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLSMKGSMRNQAGQILALIQTPDGEIERIQRGSYMGLNHGRVSGITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1107057 ACLKM2_RS11880 WP_005094322.1 2498953..2499480(-) (pilP) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
ATGAATAGGATTAAAATTACTTCAGTTTTAGCGCTTGGACTGGTATTGCTGGGATGTGATTCACGTATTGATGCAGTCAA
TCAGGAAATGGCCAATATTCGTAATCAGCCACCTTTGCCGATTGAACCTGCACCCGATTTTATGCCAGTTGAAACCTTCA
ACTATGCAGCACATCAGATCAAAAGTCCTTTCCTGCCAAGTTCTCTGGCTGCCGAGCTAAAGATTATGGCAGGGAAACGG
GTTTATCCAAATTTGTCACGTCAATTGCAACCACTGGAAAGTTATCCTCTGGAAACCTTGAGCATGAAAGGCAGCATGCG
TAATCAGGCCGGACAGATTCTGGCTTTAATCCAGACACCGGATGGCGAGATTGAACGGATACAGCGTGGTAGCTATATGG
GGCTTAATCATGGTCGTGTGAGTGGTATTACACCAACGCAGATCGATTTGATTGAGATTATTCCAGATGGCCGTGAAGGA
TATGTGGAGCGTCCGCGAAGTCTGGTTCTGATTGGGCCGGCACCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MDH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

78.363

97.714

0.766
  comL Acinetobacter baylyi ADP1

72.674

98.286

0.714

Multiple sequence alignment