Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACN2AT_RS11315 Genome accession   NZ_CP183238
Coordinates   2229780..2230400 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain NDmed     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2224780..2235400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2AT_RS11275 (ACN2AT_11180) ptsA 2225911..2226417 (-) 507 WP_009967573.1 PTS sugar transporter subunit IIA -
  ACN2AT_RS11280 (ACN2AT_11185) ypqA 2226555..2226974 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  ACN2AT_RS11285 (ACN2AT_11190) sppG 2226995..2227372 (-) 378 WP_004398696.1 YppG family protein -
  ACN2AT_RS11290 (ACN2AT_11195) yppF 2227560..2227748 (+) 189 WP_003230690.1 YppF family protein -
  ACN2AT_RS11295 (ACN2AT_11200) yppE 2227787..2228158 (-) 372 WP_003246080.1 YppE family protein -
  ACN2AT_RS11300 (ACN2AT_11205) yppD 2228204..2228449 (-) 246 WP_004398488.1 YppD family protein -
  ACN2AT_RS11305 (ACN2AT_11210) sspM 2228648..2228752 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ACN2AT_RS11310 (ACN2AT_11215) yppC 2228777..2229739 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  ACN2AT_RS11315 (ACN2AT_11220) recU 2229780..2230400 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ACN2AT_RS11320 (ACN2AT_11225) ponA 2230422..2233166 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  ACN2AT_RS11325 (ACN2AT_11230) ypoC 2233242..2233736 (-) 495 WP_009967579.1 YpoC family protein -
  ACN2AT_RS11330 (ACN2AT_11235) nth 2233733..2234392 (-) 660 WP_009967580.1 endonuclease III -
  ACN2AT_RS11335 (ACN2AT_11240) dnaD 2234411..2235109 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1104675 ACN2AT_RS11315 WP_004399067.1 2229780..2230400(+) (recU) [Bacillus subtilis strain NDmed]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1104675 ACN2AT_RS11315 WP_004399067.1 2229780..2230400(+) (recU) [Bacillus subtilis strain NDmed]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment