Detailed information NTG1102641

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: D3W47_RS07150
• Genome accession: NZ_CP182821
• Coordinates: 1466544..1467764 (-)
• Length: 406 a.a.
• NCBI ID: WP_119674064.1
• Uniprot ID: A0A418QFL6
• Organism: Deinococcus sp. RM
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1461544..1472764

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D3W47_RS07135 (D3W47_007135)	-	1462107..1463171 (-)	1065	WP_119674067.1	ATP-binding protein	-
D3W47_RS07140 (D3W47_007140)	-	1463171..1465051 (-)	1881	WP_158590282.1	DDE-type integrase/transposase/recombinase	-
D3W47_RS07145 (D3W47_007145)	-	1465318..1465956 (-)	639	WP_158590281.1	TnsA-like heteromeric transposase endonuclease subunit	-
D3W47_RS07150 (D3W47_007150)	pilC	1466544..1467764 (-)	1221	WP_119674064.1	type II secretion system F family protein	Machinery gene
D3W47_RS07155 (D3W47_007155)	-	1467849..1468472 (+)	624	WP_418514574.1	L-threonylcarbamoyladenylate synthase	-
D3W47_RS07160 (D3W47_007160)	scpB	1468469..1469026 (+)	558	WP_119674148.1	SMC-Scp complex subunit ScpB	-
D3W47_RS07165 (D3W47_007165)	-	1469170..1469931 (+)	762	WP_119674147.1	DUF4388 domain-containing protein	-
D3W47_RS07170 (D3W47_007170)	gatA	1469993..1471441 (+)	1449	WP_119674146.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	-
D3W47_RS07175 (D3W47_007175)	truB	1471513..1472454 (-)	942	WP_119674145.1	tRNA pseudouridine(55) synthase TruB	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44452.45 Da
• Isoelectric Point: 9.3441

>NTDB_id=1102641 D3W47_RS07150 WP_119674064.1 1466544..1467764(-) (pilC) [Deinococcus sp. RM]
MPVFEYRVRDRSGKVLKSQMEAETANQVRDALRSKGLMIVEIKAPKSGLNADIKIPFLDNRPPSLKQVAIFSKQLATLIN
AGVPLVQSLAILQKQIDHKGFQGVVKEMRTEIEAGTPLSDALAKHPKIFNRLYLNLVRAGETSGTLDSVLERIAAFQEKE
LALRGKIKSALTYPVVVLVFAILITYFLLTTIVPQFAGILAQLNAPLPFITRMLMAVSNFLQNQILLMLAIGAVFTFLYR
WYYNTPKGRVVIDEIKLKVPILGNLIQKSAISSFARTFGLLISSGVNIIESLEITKGTANNAIVEESIENAKNVVMVGEQ
MSSSLATSKVFPPMVVSMISIGEETGSLDDMLVKVGDFYDREVDEAVDSMTAAIEPLMIVFLGGIVGTIVAGMFLPMFAI
IGQLSQ

Nucleotide

• Length: 1221 bp

>NTDB_id=1102641 D3W47_RS07150 WP_119674064.1 1466544..1467764(-) (pilC) [Deinococcus sp. RM]
ATGCCCGTCTTCGAATACCGCGTGCGTGACCGCTCCGGCAAGGTGCTGAAATCCCAGATGGAAGCCGAGACGGCCAACCA
GGTCCGCGACGCCCTGCGCTCCAAAGGCCTGATGATCGTCGAGATCAAGGCCCCCAAGAGCGGCCTGAACGCCGACATCA
AAATTCCCTTCCTCGACAACCGCCCCCCCAGCCTGAAACAGGTCGCGATTTTCAGCAAGCAGCTCGCCACGCTGATCAAC
GCCGGGGTGCCCCTCGTGCAATCCCTGGCGATCCTCCAGAAACAGATCGACCACAAGGGTTTCCAGGGCGTCGTGAAGGA
GATGCGAACCGAGATCGAGGCAGGCACGCCACTCAGTGACGCGCTGGCCAAACACCCCAAGATCTTCAACCGGCTGTACC
TGAACCTCGTCCGGGCCGGTGAGACCAGCGGCACGCTGGATTCCGTTCTCGAACGTATTGCAGCTTTCCAGGAAAAAGAA
CTTGCTCTGCGAGGAAAGATCAAGAGCGCCCTCACGTATCCGGTCGTGGTCCTGGTCTTCGCCATCCTGATCACCTACTT
CCTGCTGACCACCATCGTGCCGCAGTTCGCGGGGATCCTCGCCCAGCTGAACGCACCCCTGCCATTCATCACCCGCATGC
TCATGGCCGTTTCCAACTTCCTGCAGAATCAGATCCTGCTGATGCTAGCGATCGGGGCTGTATTTACATTCCTGTACCGC
TGGTATTACAACACGCCCAAAGGCCGCGTCGTCATCGACGAGATCAAGTTGAAGGTCCCAATCCTCGGCAACCTGATTCA
GAAGAGTGCCATTTCCTCGTTCGCGCGCACCTTCGGTCTGCTGATCAGCAGCGGCGTCAACATCATCGAGAGCCTCGAGA
TCACCAAGGGCACCGCGAACAACGCCATCGTCGAGGAGAGCATCGAGAATGCCAAGAACGTCGTCATGGTCGGTGAGCAG
ATGAGCAGCAGTCTCGCCACCAGCAAGGTCTTCCCCCCGATGGTCGTCAGCATGATCTCCATCGGTGAAGAGACCGGTTC
GCTGGATGACATGCTCGTCAAGGTCGGGGACTTCTACGACCGCGAGGTCGACGAGGCAGTGGACAGCATGACCGCTGCGA
TTGAACCCCTGATGATCGTCTTCCTGGGGGGGATCGTCGGGACGATCGTGGCAGGTATGTTCCTGCCGATGTTCGCCATC
ATCGGCCAGCTCAGCCAGTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (274-396)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

3D structure

• AlphaFold DB: A0A418QFL6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	57.389	100	0.574