Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   ACM67B_RS02145 Genome accession   NZ_CP181247
Coordinates   435330..435617 (+) Length   95 a.a.
NCBI ID   WP_416190495.1    Uniprot ID   -
Organism   Neisseria sp. CCUG17229     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 430330..440617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67B_RS02145 (ACM67B_02145) comE 435330..435617 (+) 288 WP_416190495.1 ComEA family DNA-binding protein Machinery gene
  ACM67B_RS02150 (ACM67B_02150) aroG 435988..437031 (+) 1044 WP_416189955.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  ACM67B_RS02155 (ACM67B_02155) - 437287..438849 (+) 1563 WP_416189956.1 TerC family protein -
  ACM67B_RS02160 (ACM67B_02160) rng 438913..440406 (-) 1494 WP_416189957.1 ribonuclease G -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9863.57 Da        Isoelectric Point: 10.8151

>NTDB_id=1099564 ACM67B_RS02145 WP_416190495.1 435330..435617(+) (comE) [Neisseria sp. CCUG17229]
MKKILFTALATLAASISAAAVNINTASESELTALPGIGPAKAKAIAEYRKQHGSFKTVDELKNVKGIGEGIFSKLKNEAT
VTAPAKKAARPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1099564 ACM67B_RS02145 WP_416190495.1 435330..435617(+) (comE) [Neisseria sp. CCUG17229]
TTGAAAAAAATCCTCTTTACCGCACTGGCTACTCTGGCCGCCTCGATATCGGCTGCAGCCGTCAATATCAATACGGCCTC
CGAAAGCGAACTGACCGCCCTGCCGGGCATCGGCCCAGCCAAAGCCAAAGCGATTGCGGAGTACCGCAAACAGCACGGCA
GCTTTAAAACGGTGGACGAATTGAAAAACGTCAAAGGCATTGGCGAGGGAATCTTCTCGAAGCTGAAGAATGAGGCTACT
GTCACTGCGCCGGCCAAGAAGGCTGCCCGGCCTGCTGTTAAGAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(19-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

57.576

100

0.6
  comE Neisseria gonorrhoeae MS11

57.576

100

0.6
  comE Neisseria gonorrhoeae MS11

57.576

100

0.6
  comE Neisseria gonorrhoeae MS11

57.576

100

0.6
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.321

85.263

0.463
  comEA/celA/cilE Streptococcus pneumoniae R6

47.368

80

0.379
  comEA/celA/cilE Streptococcus pneumoniae Rx1

47.368

80

0.379
  comEA/celA/cilE Streptococcus pneumoniae D39

47.368

80

0.379
  comEA Staphylococcus aureus MW2

57.377

64.211

0.368
  comEA Staphylococcus aureus N315

57.377

64.211

0.368

Multiple sequence alignment