Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   ACM6AE_RS07760 Genome accession   NZ_CP181124
Coordinates   1613371..1613868 (-) Length   165 a.a.
NCBI ID   WP_001788897.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AG21-0604     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1608371..1618868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM6AE_RS07735 (ACM6AE_07735) gcvPB 1608533..1610005 (-) 1473 WP_086032608.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  ACM6AE_RS07740 (ACM6AE_07740) gcvPA 1609998..1611344 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ACM6AE_RS07745 (ACM6AE_07745) gcvT 1611364..1612455 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  ACM6AE_RS07750 (ACM6AE_07750) - 1612614..1613138 (-) 525 WP_001015120.1 shikimate kinase -
  ACM6AE_RS07755 (ACM6AE_07755) - 1613128..1613274 (-) 147 WP_001792109.1 hypothetical protein -
  ACM6AE_RS07760 (ACM6AE_07760) comGF 1613371..1613868 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACM6AE_RS07765 (ACM6AE_07765) comGE 1613786..1614085 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  ACM6AE_RS07770 (ACM6AE_07770) comGD 1614072..1614518 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACM6AE_RS07775 (ACM6AE_07775) comGC 1614496..1614807 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ACM6AE_RS07780 (ACM6AE_07780) comGB 1614821..1615891 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACM6AE_RS07785 (ACM6AE_07785) comGA 1615863..1616837 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  ACM6AE_RS07790 (ACM6AE_07790) - 1616889..1617512 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ACM6AE_RS07795 (ACM6AE_07795) - 1617509..1617838 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ACM6AE_RS07800 (ACM6AE_07800) - 1617838..1618824 (-) 987 WP_000161311.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19181.99 Da        Isoelectric Point: 10.1964

>NTDB_id=1098652 ACM6AE_RS07760 WP_001788897.1 1613371..1613868(-) (comGF) [Staphylococcus aureus strain AG21-0604]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISIILLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDKNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1098652 ACM6AE_RS07760 WP_001788897.1 1613371..1613868(-) (comGF) [Staphylococcus aureus strain AG21-0604]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAATTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAAAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(69-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

100

100

1
  comGF Staphylococcus aureus MW2

96.364

100

0.964

Multiple sequence alignment