Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ACKN8U_RS20890 Genome accession   NZ_CP176036
Coordinates   1187570..1188751 (+) Length   393 a.a.
NCBI ID   WP_031821113.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain L2181     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1182570..1193751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKN8U_RS20875 (ACKN8U_20875) - 1183631..1184635 (+) 1005 WP_203487492.1 DUF1214 domain-containing protein -
  ACKN8U_RS20880 (ACKN8U_20880) - 1184730..1185584 (+) 855 WP_203525991.1 LysR family transcriptional regulator -
  ACKN8U_RS20885 (ACKN8U_20885) ylqF 1186271..1187215 (+) 945 WP_267712209.1 ribosome biogenesis GTPase YlqF -
  ACKN8U_RS20890 (ACKN8U_20890) cqsA 1187570..1188751 (+) 1182 WP_031821113.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ACKN8U_RS20895 (ACKN8U_20895) cqsS 1188829..1190877 (-) 2049 WP_140359723.1 response regulator Regulator
  ACKN8U_RS20900 (ACKN8U_20900) - 1191197..1191814 (+) 618 WP_005486601.1 HAD family phosphatase -
  ACKN8U_RS20905 (ACKN8U_20905) - 1191900..1192448 (-) 549 WP_005486527.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43852.19 Da        Isoelectric Point: 6.4984

>NTDB_id=1079474 ACKN8U_RS20890 WP_031821113.1 1187570..1188751(+) (cqsA) [Vibrio parahaemolyticus strain L2181]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNLPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPEGSGLLQKLGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDIFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1079474 ACKN8U_RS20890 WP_031821113.1 1187570..1188751(+) (cqsA) [Vibrio parahaemolyticus strain L2181]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAACACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCGGCCTTTGAGCACCAGCTGGCGACGTTTGTCGGTATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCTCCAAACCTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCATAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCTGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAGAGGGGTCTGGATTATTACAAAAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATATTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACATTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAATTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.14

98.473

0.573

Multiple sequence alignment