Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACJGE4_RS08910 Genome accession   NZ_CP174519
Coordinates   1825454..1825888 (+) Length   144 a.a.
NCBI ID   WP_015417516.1    Uniprot ID   -
Organism   Bacillus velezensis strain JD-3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1820454..1830888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJGE4_RS08905 (ACJGE4_08905) - 1823954..1825165 (-) 1212 WP_094031922.1 cytochrome P450 -
  ACJGE4_RS08910 (ACJGE4_08910) nucA/comI 1825454..1825888 (+) 435 WP_015417516.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACJGE4_RS08915 (ACJGE4_08915) - 1825948..1826703 (+) 756 WP_094031726.1 YoaK family protein -
  ACJGE4_RS08920 (ACJGE4_08920) - 1826737..1827099 (-) 363 WP_007410383.1 hypothetical protein -
  ACJGE4_RS08925 (ACJGE4_08925) - 1827293..1828621 (-) 1329 WP_015239896.1 S8 family peptidase -
  ACJGE4_RS08930 (ACJGE4_08930) - 1828800..1829033 (+) 234 WP_015239897.1 hypothetical protein -
  ACJGE4_RS08935 (ACJGE4_08935) - 1829289..1829996 (+) 708 WP_007410381.1 poly-gamma-glutamate hydrolase family protein -
  ACJGE4_RS08940 (ACJGE4_08940) - 1830056..1830508 (+) 453 WP_039251441.1 OsmC family protein -
  ACJGE4_RS08945 (ACJGE4_08945) - 1830522..1830875 (-) 354 WP_094031727.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15514.44 Da        Isoelectric Point: 7.2418

>NTDB_id=1077720 ACJGE4_RS08910 WP_015417516.1 1825454..1825888(+) (nucA/comI) [Bacillus velezensis strain JD-3]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADVRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1077720 ACJGE4_RS08910 WP_015417516.1 1825454..1825888(+) (nucA/comI) [Bacillus velezensis strain JD-3]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGTATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCAGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATGTCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.258

86.111

0.493

Multiple sequence alignment