Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ACJEIB_RS13530 Genome accession   NZ_CP174236
Coordinates   3036331..3036990 (-) Length   219 a.a.
NCBI ID   WP_011216518.1    Uniprot ID   -
Organism   Legionella pneumophila strain SPF589     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3031331..3041990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEIB_RS13515 (ACJEIB_13515) - 3032284..3032943 (+) 660 WP_011216515.1 hypothetical protein -
  ACJEIB_RS13520 (ACJEIB_13520) lcl 3033111..3034439 (+) 1329 WP_070322485.1 collagen-like adhesin Lcl -
  ACJEIB_RS13525 (ACJEIB_13525) uvrC 3034463..3036319 (-) 1857 WP_011216517.1 excinuclease ABC subunit UvrC -
  ACJEIB_RS13530 (ACJEIB_13530) letA 3036331..3036990 (-) 660 WP_011216518.1 two-component system response regulator LetA Regulator
  ACJEIB_RS13535 (ACJEIB_13535) phhA 3037115..3037933 (-) 819 WP_027266285.1 phenylalanine 4-monooxygenase -
  ACJEIB_RS13540 (ACJEIB_13540) - 3038374..3039471 (+) 1098 WP_011216520.1 molybdopterin-binding protein -
  ACJEIB_RS13545 (ACJEIB_13545) cgtA 3039430..3040455 (-) 1026 WP_011216521.1 Obg family GTPase CgtA -
  ACJEIB_RS13550 (ACJEIB_13550) rpmA 3040669..3040947 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  ACJEIB_RS13555 (ACJEIB_13555) rplU 3040960..3041271 (-) 312 WP_011216522.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24556.49 Da        Isoelectric Point: 5.1572

>NTDB_id=1076152 ACJEIB_RS13530 WP_011216518.1 3036331..3036990(-) (letA) [Legionella pneumophila strain SPF589]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1076152 ACJEIB_RS13530 WP_011216518.1 3036331..3036990(-) (letA) [Legionella pneumophila strain SPF589]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTGGCCTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGCTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCA
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAGTCCGG
GGCTGAAGAAATGGCTGCCGCAATTCGTAAAGTGGCCAAAGGTGAGAAATATCTTAGTGCCGAGATAGCACAAAAAATGG
CAATTAATAGTCTCCAGGAGTCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACTAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGCTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAGCACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

99.543

100

0.995
  letA Legionella pneumophila strain ERS1305867

99.543

100

0.995

Multiple sequence alignment