Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACCO37_RS08160 Genome accession   NZ_CP174101
Coordinates   1615022..1615801 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain BHZ-29     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1610022..1620801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO37_RS08140 trmFO 1610709..1612016 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACCO37_RS08145 xerC 1612086..1613003 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  ACCO37_RS08150 hslV 1613019..1613564 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  ACCO37_RS08155 hslU 1613581..1614984 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  ACCO37_RS08160 codY 1615022..1615801 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACCO37_RS08165 flgB 1616155..1616544 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  ACCO37_RS08170 flgC 1616544..1616996 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  ACCO37_RS08175 fliE 1617007..1617327 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  ACCO37_RS08180 fliF 1617370..1618980 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  ACCO37_RS08185 fliG 1618993..1620009 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  ACCO37_RS08190 fliH 1620002..1620757 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=1074286 ACCO37_RS08160 WP_003154263.1 1615022..1615801(+) (codY) [Bacillus velezensis strain BHZ-29]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1074286 ACCO37_RS08160 WP_003154263.1 1615022..1615801(+) (codY) [Bacillus velezensis strain BHZ-29]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment