Detailed information NTG1068337

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ACFVP7_RS20550
• Genome accession: NZ_CP172606
• Coordinates: 3910412..3911557 (+)
• Length: 381 a.a.
• NCBI ID: WP_017696253.1
• Uniprot ID: A0A0C3JF17
• Organism: Bacillus sp. SG20033
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3905412..3916557

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFVP7_RS20525 (ACFVP7_20525)	-	3905427..3906707 (+)	1281	WP_029318696.1	pitrilysin family protein	-
ACFVP7_RS20530 (ACFVP7_20530)	albG	3906704..3907405 (+)	702	WP_029318695.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
ACFVP7_RS20535 (ACFVP7_20535)	-	3907411..3908787 (-)	1377	WP_338731382.1	YncE family protein	-
ACFVP7_RS20540 (ACFVP7_20540)	-	3908827..3910182 (-)	1356	WP_163117070.1	YncE family protein	-
ACFVP7_RS20545 (ACFVP7_20545)	-	3910179..3910409 (-)	231	WP_041334639.1	hypothetical protein	-
ACFVP7_RS20550 (ACFVP7_20550)	rapF	3910412..3911557 (+)	1146	WP_017696253.1	tetratricopeptide repeat protein	Regulator
ACFVP7_RS20555 (ACFVP7_20555)	-	3911541..3911660 (+)	120	WP_014665774.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
ACFVP7_RS20560 (ACFVP7_20560)	-	3911759..3912217 (+)	459	Protein_3994	YbaK/EbsC family protein	-
ACFVP7_RS20565 (ACFVP7_20565)	speB	3912249..3913121 (-)	873	WP_003227545.1	agmatinase	-
ACFVP7_RS20570 (ACFVP7_20570)	speE	3913182..3914012 (-)	831	WP_003227543.1	spermidine synthase	-
ACFVP7_RS20575 (ACFVP7_20575)	-	3914214..3916289 (+)	2076	WP_144500474.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45593.24 Da
• Isoelectric Point: 5.0684

>NTDB_id=1068337 ACFVP7_RS20550 WP_017696253.1 3910412..3911557(+) (rapF) [Bacillus sp. SG20033]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYVLAIQFFKKAESKLVFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAFTLAKTEQQPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIQVFEGSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGKEYSAAAGDTVYLTEFEFLESLYLSGPDEERI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASHYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=1068337 ACFVP7_RS20550 WP_017696253.1 3910412..3911557(+) (rapF) [Bacillus sp. SG20033]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAACTGGATCGCCGTGAATATGTATTAGCCATTCAATTCTTTAAAAAAGCTGAGAGCAAGCTGGTTTTTG
TCAAAGATAAAATCGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTCTCC
ATGGACTATGCACGTCAAGCATTCGAAATATACAGTGAACAGACTACATATGATATCAGAATGATTCAATGCCAGTCCTT
ATTCGGAGCCAACTTTTTGGATTTAAAACAATACGAAAAAGCAATTGCCCATTTTCAAAAAGCCTTTACACTTGCAAAAA
CAGAGCAGCAGCCCCAATTAATGGGAAGAACACTTTATAACATAGCACTCTGCAAGCAAAACCAAAACAGTTTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCAAGTATTTGAAGGATCTAAAATGCTTCCTTCATTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCCTGTGAATATCATAAAAAAGGAAAAGAGTATTCTGCAG
CTGCGGGAGATACCGTGTATCTGACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCGGATGAGGAACGGATA
GAAAAATGTTTTGTTTTTCTTGAAAGTAAAATGATGTATGCAGATATTGAGGACTTCGCACTTGATGTTGCTAAATATTA
TCATCAACAGGAAAATTACAAAAAAGCATCTCATTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_8) (263-290)

• Tetratricopeptide repeat (TPR_12) (189-253)

3D structure

• AlphaFold DB: A0A0C3JF17

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	80.052	100	0.801
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57