Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   QUE23_RS07460 Genome accession   NZ_AP028022
Coordinates   1423262..1423528 (-) Length   88 a.a.
NCBI ID   WP_286348429.1    Uniprot ID   -
Organism   Helicobacter sp. NHP21005 strain NHP21-005     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1418262..1428528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE23_RS07440 (NHP21005_15370) - 1418532..1420856 (-) 2325 WP_286348426.1 TonB-dependent receptor family protein -
  QUE23_RS07445 (NHP21005_15380) - 1421033..1421740 (+) 708 WP_286348427.1 outer membrane beta-barrel protein -
  QUE23_RS07450 (NHP21005_15390) fliW 1421788..1422192 (+) 405 WP_286348428.1 flagellar assembly protein FliW -
  QUE23_RS07455 (NHP21005_15400) murG 1422198..1423271 (+) 1074 WP_286349440.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  QUE23_RS07460 (NHP21005_15410) comB3 1423262..1423528 (-) 267 WP_286348429.1 competence protein ComB Machinery gene
  QUE23_RS07465 (NHP21005_15420) comB2 1423528..1423791 (-) 264 WP_286348430.1 TrbC/VirB2 family protein Machinery gene
  QUE23_RS07470 (NHP21005_15430) - 1424059..1424862 (+) 804 WP_286348431.1 HrcA family transcriptional regulator -
  QUE23_RS07475 (NHP21005_15440) grpE 1424853..1425428 (+) 576 WP_286349441.1 nucleotide exchange factor GrpE -
  QUE23_RS07480 (NHP21005_15450) dnaK 1425454..1427322 (+) 1869 WP_286348432.1 molecular chaperone DnaK -
  QUE23_RS07485 tnpA 1427670..1428142 (+) 473 Protein_1469 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9900.73 Da        Isoelectric Point: 4.4015

>NTDB_id=103240 QUE23_RS07460 WP_286348429.1 1423262..1423528(-) (comB3) [Helicobacter sp. NHP21005 strain NHP21-005]
MDAPLLVVSMPNLQAISTKDKFLWLNAKSWIVSIFIPFVLWPWLGTLWALALYGGFLALFSVLEFFDEDIADIIIARSKL
TGATSFYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=103240 QUE23_RS07460 WP_286348429.1 1423262..1423528(-) (comB3) [Helicobacter sp. NHP21005 strain NHP21-005]
ATGGATGCTCCCTTATTGGTGGTGTCCATGCCAAATTTGCAAGCCATTTCTACCAAAGATAAATTCTTGTGGCTCAATGC
TAAATCGTGGATTGTATCGATCTTTATCCCCTTTGTGTTGTGGCCGTGGCTAGGCACACTGTGGGCTTTGGCGTTGTATG
GGGGGTTTTTAGCCCTTTTTAGCGTGTTGGAGTTCTTTGACGAAGACATCGCCGACATCATCATCGCCCGCTCTAAACTC
ACGGGGGCGACAAGTTTCTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

62.651

94.318

0.591

Multiple sequence alignment