Detailed information NTG1017192

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: AB0T70_RS09920
• Genome accession: NZ_CP160032
• Coordinates: 2088139..2088840 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain AB44-AUFP
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2083139..2093840

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0T70_RS09890 (AB0T70_09890)	-	2083446..2083889 (-)	444	WP_002068274.1	SRPBCC family protein	-
AB0T70_RS09895 (AB0T70_09895)	tadA	2083959..2084462 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
AB0T70_RS09900 (AB0T70_09900)	-	2084469..2085593 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
AB0T70_RS09905 (AB0T70_09905)	ung	2085590..2086303 (-)	714	WP_001177530.1	uracil-DNA glycosylase	-
AB0T70_RS09910 (AB0T70_09910)	-	2086354..2086950 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
AB0T70_RS09915 (AB0T70_09915)	gspK	2087180..2088139 (-)	960	WP_000301460.1	type II secretion system minor pseudopilin GspK	-
AB0T70_RS09920 (AB0T70_09920)	xcpW	2088139..2088840 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
AB0T70_RS09925 (AB0T70_09925)	xcpV	2088840..2089220 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
AB0T70_RS09930 (AB0T70_09930)	-	2089210..2089764 (-)	555	WP_000841372.1	type II secretion system protein	-
AB0T70_RS09935 (AB0T70_09935)	-	2089774..2090382 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
AB0T70_RS09940 (AB0T70_09940)	-	2090420..2091193 (-)	774	WP_000497301.1	TatD family hydrolase	-
AB0T70_RS09945 (AB0T70_09945)	-	2091211..2091552 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
AB0T70_RS09950 (AB0T70_09950)	-	2091564..2092544 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
AB0T70_RS09955 (AB0T70_09955)	kdsB	2092556..2093317 (-)	762	WP_000680696.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=1017192 AB0T70_RS09920 WP_000594572.1 2088139..2088840(-) (xcpW) [Acinetobacter baumannii strain AB44-AUFP]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=1017192 AB0T70_RS09920 WP_000594572.1 2088139..2088840(-) (xcpW) [Acinetobacter baumannii strain AB44-AUFP]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991