Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABV836_RS10270 | Genome accession | NZ_CP159579 |
| Coordinates | 2162749..2163129 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain Ab6-Co-2 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2157749..2168129
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABV836_RS10240 (ABV836_10240) | tadA | 2157867..2158370 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| ABV836_RS10245 (ABV836_10245) | - | 2158377..2159501 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABV836_RS10250 (ABV836_10250) | ung | 2159498..2160211 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABV836_RS10255 (ABV836_10255) | - | 2160262..2160858 (-) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| ABV836_RS10260 (ABV836_10260) | gspK | 2161089..2162048 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| ABV836_RS10265 (ABV836_10265) | xcpW | 2162048..2162749 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABV836_RS10270 (ABV836_10270) | xcpV | 2162749..2163129 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABV836_RS10275 (ABV836_10275) | - | 2163119..2163673 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ABV836_RS10280 (ABV836_10280) | - | 2163683..2164291 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABV836_RS10285 (ABV836_10285) | - | 2164329..2165102 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ABV836_RS10290 (ABV836_10290) | - | 2165120..2165461 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABV836_RS10295 (ABV836_10295) | - | 2165473..2166453 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| ABV836_RS10300 (ABV836_10300) | kdsB | 2166465..2167226 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1014644 ABV836_RS10270 WP_000836911.1 2162749..2163129(-) (xcpV) [Acinetobacter baumannii strain Ab6-Co-2]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1014644 ABV836_RS10270 WP_000836911.1 2162749..2163129(-) (xcpV) [Acinetobacter baumannii strain Ab6-Co-2]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |