Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ABLB98_RS01820 Genome accession   NZ_CP157435
Coordinates   387496..389736 (-) Length   746 a.a.
NCBI ID   WP_348882710.1    Uniprot ID   -
Organism   Acinetobacter sp. XH1639     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 382496..394736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB98_RS01810 (ABLB98_01805) - 383120..384937 (-) 1818 WP_348882640.1 cation:proton antiporter -
  ABLB98_RS01815 (ABLB98_01810) - 385246..387360 (-) 2115 WP_348882641.1 TonB-dependent siderophore receptor -
  ABLB98_RS01820 (ABLB98_01815) priA 387496..389736 (-) 2241 WP_348882710.1 primosomal protein N' Machinery gene
  ABLB98_RS01825 (ABLB98_01820) gspF 389883..391088 (+) 1206 WP_348882642.1 type II secretion system inner membrane protein GspF -
  ABLB98_RS01830 (ABLB98_01825) gspG 391097..391630 (+) 534 WP_348882643.1 type II secretion system major pseudopilin GspG -
  ABLB98_RS01835 (ABLB98_01830) - 391894..392238 (+) 345 WP_005162813.1 hypothetical protein -
  ABLB98_RS01840 (ABLB98_01835) lnt 392295..393854 (-) 1560 WP_348882644.1 apolipoprotein N-acyltransferase -
  ABLB98_RS01845 (ABLB98_01840) - 393851..394690 (-) 840 WP_348882645.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 84751.79 Da        Isoelectric Point: 8.5631

>NTDB_id=1006835 ABLB98_RS01820 WP_348882710.1 387496..389736(-) (priA) [Acinetobacter sp. XH1639]
MNEAYMPTENSNAILYRIRVAIPVYVYDTFDYTVSAEQYAQAQIGARVAISFGRQNLVGIITEKVDPNEVFIGQFKLKAI
TELLDQESILDQQVLTLLTWSAQYYQFPIGEVMQSALPTLLRQGRALDILFHLWKIIPHNDPNALLKRSQKQYDAHQVLK
LHPHGATENILNLSGVETSTLKALEKKGLVECCLEPHDFTPTPVQLAQVPLTPNEDQKKAIQQILKAQHHYQAFLLDGLT
GSGKTEVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSA
IYTPIPHLGLIILDEEHDLSFKQQEGFRYHTRDVALYRGHLQNCPVILGSATPSIDSYHLVESGKLHLLELNQRAGIAVL
PKMYVVDLKIAKKKHGLSQTLIEQIKHTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHYLHCHH
CGTINRLPDHCPTCQKQSLKTIGAGTAKLEEHVQELFPHHEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKG
HHFPHVTLVAILDIDAGLLSVDPRAPERTAQLIVQVAGRAGRGEHKGSVYLQSLRPDHPMLTTLIEHDYRTVAKQMLADR
KIALLPPYRYAVLVRVESKDRDYSQQFLADIAQQLRTMAGDLVDIWGPIPAPMERKAGRYRAHMVILSTDRAKLHFYLRQ
WWQQVVHLPRQHLLRLSIDVDPQEFS

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=1006835 ABLB98_RS01820 WP_348882710.1 387496..389736(-) (priA) [Acinetobacter sp. XH1639]
ATGAATGAAGCCTATATGCCTACCGAAAATTCTAACGCGATTCTGTACCGTATTCGAGTTGCAATACCCGTTTATGTTTA
CGACACGTTTGACTACACGGTCAGCGCTGAACAATACGCACAAGCTCAAATCGGTGCACGTGTCGCGATTTCTTTTGGTC
GGCAAAATCTCGTGGGAATCATTACGGAGAAAGTTGATCCAAACGAAGTATTTATAGGGCAATTCAAACTTAAGGCAATC
ACAGAATTACTCGATCAGGAATCGATTTTAGACCAACAAGTTTTAACTTTGTTGACATGGTCAGCCCAATATTACCAATT
TCCGATTGGTGAGGTGATGCAAAGTGCCCTGCCTACTTTGTTAAGACAAGGTCGCGCCTTAGACATTCTGTTTCATTTAT
GGAAAATCATCCCTCACAATGACCCCAATGCCTTATTAAAACGCTCTCAAAAACAATATGATGCCCATCAGGTTTTGAAG
CTTCATCCACATGGAGCCACCGAGAATATACTTAACCTGAGTGGTGTAGAAACCTCAACTTTAAAGGCATTAGAAAAAAA
GGGCTTGGTTGAATGCTGCCTAGAACCGCATGATTTCACCCCTACACCTGTGCAATTGGCTCAAGTGCCTTTAACACCGA
ACGAAGATCAAAAGAAAGCCATTCAACAGATCCTCAAAGCACAACATCACTATCAGGCATTTTTACTCGATGGTTTGACT
GGCAGTGGCAAAACTGAAGTTTATTTGCAAGTCATGCATGAGGTGTTAAAACAAGGCAAACAAGTATTGGTACTGGTGCC
TGAAATTGGCCTAACCCCGCAAACGGTCGCTCGTTTTAAGTCTCGCTTTCACTGTGATGTGGCCTTGCTGCACTCAGGCT
TAAATGACTCAAAACGTTTACAGGCATGGCAACATGCACAAACGGGCAAAGCTTCCATTATTATTGGCACACGTTCAGCA
ATCTATACCCCAATACCGCATTTGGGCTTAATCATTCTAGATGAGGAACATGATCTCTCGTTTAAGCAGCAAGAAGGTTT
CCGCTATCATACCCGTGATGTCGCGTTGTATCGTGGCCATTTGCAAAACTGCCCTGTCATTCTCGGTTCAGCCACCCCAA
GTATCGACAGTTATCACTTGGTAGAATCGGGCAAGTTACATTTGCTTGAGTTGAATCAGCGTGCGGGCATCGCTGTACTG
CCGAAAATGTATGTGGTGGATTTAAAAATCGCAAAAAAGAAGCACGGACTCAGCCAAACCCTGATCGAACAGATCAAACA
TACTTTAGAACGTAAAGAACAAGTGCTGATCTTTTTAAATCGACGTGGTTATGCGCCGATCCTGATGTGTGAAAGCTGTG
GTTGGCAAGCCAACTGCCCACATTGCGATGCGCATTTTACTTTGCATTCACAACCCTACCATTATTTGCATTGTCATCAT
TGCGGCACCATCAATCGCCTGCCTGATCATTGTCCTACCTGTCAGAAACAAAGCTTAAAAACGATTGGGGCAGGAACAGC
AAAACTTGAAGAACATGTACAGGAGCTTTTTCCACATCATGAAGTGATTCGGGTCGATCGTGACAGCACCAGTCGAGTCG
GTAGCTGGCAAAAAATCTATGATCGCATTCAGCAAAATAAACCGAGCATTTTGTTGGGCACTCAAATGCTGGCCAAAGGC
CATCATTTTCCGCATGTTACCCTTGTTGCGATTTTAGATATTGATGCAGGACTGCTCAGTGTTGACCCACGTGCACCTGA
ACGAACTGCACAGCTGATTGTGCAAGTCGCTGGCCGTGCTGGTCGTGGTGAGCATAAAGGCAGTGTTTATTTGCAAAGTT
TGCGTCCAGATCATCCGATGCTGACCACATTGATTGAACATGATTATCGTACTGTCGCCAAACAAATGCTGGCTGATCGC
AAAATTGCCCTGCTACCACCTTATCGTTATGCAGTATTGGTTCGGGTTGAATCTAAAGACAGAGATTATAGCCAACAATT
CTTGGCAGATATTGCACAACAATTACGTACAATGGCTGGAGATTTAGTTGATATTTGGGGGCCCATTCCCGCACCGATGG
AACGTAAAGCTGGTCGTTATCGGGCGCATATGGTGATTTTATCCACTGATCGCGCCAAACTGCACTTTTATTTACGTCAA
TGGTGGCAACAAGTGGTACATTTACCGCGTCAGCATCTGCTCAGACTCTCGATTGACGTTGATCCACAAGAGTTTAGTTA
A

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(647-742)

3DNA-binding domain (3BD) (PriA_3primeBD)

(19-118)

DEAD/DEAH box helicase (DEAD)

(215-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.732

99.062

0.81

Multiple sequence alignment