Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABDM36_RS12345 Genome accession   NZ_CP157384
Coordinates   2711962..2712495 (-) Length   177 a.a.
NCBI ID   WP_000168289.1    Uniprot ID   Q9KUW2
Organism   Vibrio cholerae C6706     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2706962..2717495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDM36_RS12325 - 2707417..2707734 (-) 318 WP_000252812.1 MSHA biogenesis protein MshK -
  ABDM36_RS12330 gspM 2707727..2708377 (-) 651 WP_000835144.1 type II secretion system protein GspM -
  ABDM36_RS12335 - 2708374..2709813 (-) 1440 WP_000743253.1 PilN domain-containing protein -
  ABDM36_RS12340 csrD 2709826..2711838 (-) 2013 WP_001918202.1 RNase E specificity factor CsrD -
  ABDM36_RS12345 ssb 2711962..2712495 (-) 534 WP_000168289.1 single-stranded DNA-binding protein Machinery gene
  ABDM36_RS12350 qstR 2712787..2713431 (+) 645 WP_001188316.1 LuxR C-terminal-related transcriptional regulator Regulator
  ABDM36_RS12355 galU 2713604..2714476 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ABDM36_RS12360 uvrA 2714632..2717454 (+) 2823 WP_000357696.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19672.90 Da        Isoelectric Point: 5.7626

>NTDB_id=1006539 ABDM36_RS12345 WP_000168289.1 2711962..2712495(-) (ssb) [Vibrio cholerae C6706]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNVPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1006539 ABDM36_RS12345 WP_000168289.1 2711962..2712495(-) (ssb) [Vibrio cholerae C6706]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGTTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KUW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

100

100

1
  ssb Glaesserella parasuis strain SC1401

50.265

100

0.537
  ssb Neisseria meningitidis MC58

47.778

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.486

Multiple sequence alignment