NT genes of Gallibacterium anatis strain TH22
In this species, transformation by exogenous DNA is regulated by the presence of a specific Uptake Signal Sequence (USS) (PMID: 17038178).
Two versions of USS have been described (PMID: 23637627, PMID: 17038178): version A (5'-AAGTGCGGT-3'), named Hin-USS, is found in Haemophilus influenzae (PMID: 7542802, PMID: 22753031, PMID: 6285382), Actinobacillus actinomycetemcomitans (PMID: 12057937, PMID: 17074902) and Avibacterium paragallinarum (PMID: 37212663). ; USS version B (5'-ACAAGCGGT-3'), named the Apl-USS subtype, is found in Actinobacillus pleuropneumoniae (PMID: 17038178).
Here we analyzed the abundance of these 2 USS variants by using the perfect match identified by BLASTn-short.
USS statistics
| USS variants | Sequence | Count | Proportion (%) |
| Hin-USS | AAGTGCGGT | 80 | 61.54 |
| Apl-USS | ACAAGCGGT | 50 | 38.46 |
USS detail table
| Accession | Replicon | USS variant | Coordinates | Strand | Sequence |
|---|---|---|---|---|---|
| NZ_CP103874 | chromosome | Apl-USS | 2590525..2590533 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 149188..149196 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 304350..304358 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 383704..383712 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 408977..408985 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 452996..453004 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 474849..474857 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 559426..559434 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 566456..566464 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 579102..579110 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 655862..655870 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 1938192..1938200 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 749360..749368 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 811003..811011 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 1789204..1789212 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 896039..896047 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 923066..923074 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 1684611..1684619 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 958865..958873 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 1666061..1666069 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 1292289..1292297 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 1280841..1280849 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 1488022..1488030 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 1087983..1087991 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 1010927..1010935 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 1655370..1655378 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 913048..913056 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 882622..882630 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 833849..833857 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 687060..687068 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 648493..648501 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 1998213..1998221 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 2097215..2097223 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 2197408..2197416 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 437124..437132 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 417500..417508 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 328988..328996 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 325059..325067 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 286593..286601 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 201328..201336 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 182758..182766 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 165034..165042 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 132976..132984 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 127821..127829 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 106618..106626 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 2576061..2576069 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 51006..51014 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 31734..31742 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 2621630..2621638 | + | ACAAGCGGT |
| NZ_CP103874 | chromosome | Apl-USS | 4419..4427 | - | ACAAGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 9669..9677 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 31823..31831 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 39771..39779 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 41322..41330 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 42454..42462 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 66008..66016 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 2563325..2563333 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 141909..141917 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 165123..165131 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 217849..217857 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 225478..225486 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 250314..250322 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 2350130..2350138 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 377070..377078 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 2225040..2225048 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 410286..410294 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 411901..411909 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 416963..416971 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 419897..419905 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 2188144..2188152 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 470446..470454 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 2163117..2163125 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 2157294..2157302 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 2119201..2119209 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 648582..648590 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1984746..1984754 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 662399..662407 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 670279..670287 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 707756..707764 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1893024..1893032 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1892160..1892168 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1888874..1888882 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1884645..1884653 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1880316..1880324 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1879548..1879556 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1876626..1876634 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 822841..822849 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1802296..1802304 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1736568..1736576 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 927257..927265 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 930122..930130 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1697735..1697743 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1664881..1664889 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1019836..1019844 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1114401..1114409 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1497819..1497827 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1495124..1495132 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1143330..1143338 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1425108..1425116 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1299159..1299167 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1293249..1293257 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1277658..1277666 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1480031..1480039 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 953658..953666 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1692587..1692595 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1693254..1693262 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 927566..927574 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1872424..1872432 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1873037..1873045 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1873516..1873524 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1874075..1874083 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1876154..1876162 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1877993..1878001 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 1882108..1882116 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 678145..678153 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 662418..662426 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 541746..541754 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 520948..520956 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 2160500..2160508 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 416936..416944 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 410261..410269 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 398966..398974 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 2244413..2244421 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 2256499..2256507 | + | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 362152..362160 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 250331..250339 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 239374..239382 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 198603..198611 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 188111..188119 | - | AAGTGCGGT |
| NZ_CP103874 | chromosome | Hin-USS | 12349..12357 | - | AAGTGCGGT |