NT genes of Gallibacterium anatis strain ESV200
In this species, transformation by exogenous DNA is regulated by the presence of a specific Uptake Signal Sequence (USS) (PMID: 17038178).
Two versions of USS have been described (PMID: 23637627, PMID: 17038178): version A (5'-AAGTGCGGT-3'), named Hin-USS, is found in Haemophilus influenzae (PMID: 7542802, PMID: 22753031, PMID: 6285382), Actinobacillus actinomycetemcomitans (PMID: 12057937, PMID: 17074902) and Avibacterium paragallinarum (PMID: 37212663). ; USS version B (5'-ACAAGCGGT-3'), named the Apl-USS subtype, is found in Actinobacillus pleuropneumoniae (PMID: 17038178).
Here we analyzed the abundance of these 2 USS variants by using the perfect match identified by BLASTn-short.
USS statistics
| USS variants | Sequence | Count | Proportion (%) |
| Hin-USS | AAGTGCGGT | 98 | 70.00 |
| Apl-USS | ACAAGCGGT | 42 | 30.00 |
USS detail table
| Accession | Replicon | USS variant | Coordinates | Strand | Sequence |
|---|---|---|---|---|---|
| NZ_CP114281 | chromosome | Apl-USS | 2436261..2436269 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 2349086..2349094 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 2261590..2261598 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 2230549..2230557 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 2130294..2130302 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 2112564..2112572 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 2074208..2074216 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 2068012..2068020 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 2046555..2046563 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 1989225..1989233 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 1949469..1949477 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 1754198..1754206 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 1289468..1289476 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 1172241..1172249 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 677767..677775 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 560730..560738 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 505580..505588 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 501214..501222 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 353307..353315 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 336337..336345 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 262761..262769 | - | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 181969..181977 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 241987..241995 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 281720..281728 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 322602..322610 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 346354..346362 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 374464..374472 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 637805..637813 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 665978..665986 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 1161489..1161497 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 1348270..1348278 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 1444163..1444171 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 1632084..1632092 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 1897738..1897746 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 1934922..1934930 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 2090419..2090427 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 2240256..2240264 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 2364293..2364301 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 2385475..2385483 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 2480882..2480890 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 2487915..2487923 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Apl-USS | 2501878..2501886 | + | ACAAGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2443532..2443540 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2410639..2410647 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2338361..2338369 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2334282..2334290 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2332992..2333000 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2290728..2290736 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2194534..2194542 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2183577..2183585 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2141076..2141084 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1885004..1885012 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1875328..1875336 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1873896..1873904 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1819323..1819331 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1700411..1700419 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1577070..1577078 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1546016..1546024 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1538896..1538904 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1513898..1513906 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1464699..1464707 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1456458..1456466 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1426414..1426422 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1334793..1334801 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1297444..1297452 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1185333..1185341 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1119814..1119822 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1031447..1031455 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1023827..1023835 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 856233..856241 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 788551..788559 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 769196..769204 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 649996..650004 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 535731..535739 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 350854..350862 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 281631..281639 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 152480..152488 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 143582..143590 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 142387..142395 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 138062..138070 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 136739..136747 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 69395..69403 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 53497..53505 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 14710..14718 | - | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 53478..53486 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 61358..61366 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 97410..97418 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 114677..114685 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 117241..117249 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 118478..118486 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 118598..118606 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 141858..141866 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 144499..144507 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 145439..145447 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 146256..146264 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 149168..149176 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 149856..149864 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 251998..252006 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 252713..252721 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 353396..353404 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 437872..437880 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 512868..512876 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 531394..531402 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 557741..557749 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 644851..644859 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 645516..645524 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 667158..667166 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 829386..829394 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 839881..839889 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 842575..842583 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 895481..895489 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1006474..1006482 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1020843..1020851 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1022653..1022661 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1508134..1508142 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1509346..1509354 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1511326..1511334 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1539534..1539542 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1546395..1546403 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1603540..1603548 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1774300..1774308 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1873879..1873887 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1927839..1927847 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1954719..1954727 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1977765..1977773 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 1980448..1980456 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2004949..2004957 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2083141..2083149 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2160311..2160319 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2167938..2167946 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2194517..2194525 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2261679..2261687 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2305647..2305655 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2328008..2328016 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2334309..2334317 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2340763..2340771 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2381739..2381747 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2408011..2408019 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2414107..2414115 | + | AAGTGCGGT |
| NZ_CP114281 | chromosome | Hin-USS | 2436350..2436358 | + | AAGTGCGGT |