NT genes of Gallibacterium anatis strain DFSO2
In this species, transformation by exogenous DNA is regulated by the presence of a specific Uptake Signal Sequence (USS) (PMID: 17038178).
Two versions of USS have been described (PMID: 23637627, PMID: 17038178): version A (5'-AAGTGCGGT-3'), named Hin-USS, is found in Haemophilus influenzae (PMID: 7542802, PMID: 22753031, PMID: 6285382), Actinobacillus actinomycetemcomitans (PMID: 12057937, PMID: 17074902) and Avibacterium paragallinarum (PMID: 37212663). ; USS version B (5'-ACAAGCGGT-3'), named the Apl-USS subtype, is found in Actinobacillus pleuropneumoniae (PMID: 17038178).
Here we analyzed the abundance of these 2 USS variants by using the perfect match identified by BLASTn-short.
USS statistics
| USS variants | Sequence | Count | Proportion (%) |
| Hin-USS | AAGTGCGGT | 71 | 63.39 |
| Apl-USS | ACAAGCGGT | 41 | 36.61 |
USS detail table
| Accession | Replicon | USS variant | Coordinates | Strand | Sequence |
|---|---|---|---|---|---|
| NZ_CP126977 | chromosome | Apl-USS | 2407998..2408006 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 2287137..2287145 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 2237839..2237847 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 2214712..2214720 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 2144779..2144787 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 2139625..2139633 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 2118272..2118280 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 2061802..2061810 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 2015928..2015936 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 1953818..1953826 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 1755352..1755360 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 1317473..1317481 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 1184281..1184289 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 1079843..1079851 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 1010634..1010642 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 565785..565793 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 300766..300774 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 270803..270811 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 226900..226908 | - | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 50163..50171 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 143395..143403 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 206588..206596 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 282797..282805 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 310782..310790 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 349098..349106 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 917956..917964 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 1071748..1071756 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 1173525..1173533 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 1377488..1377496 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 1459194..1459202 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 1559748..1559756 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 1652001..1652009 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 1941706..1941714 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 1984914..1984922 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 2160992..2161000 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 2297228..2297236 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 2365720..2365728 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 2423206..2423214 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 2444863..2444871 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 2546084..2546092 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Apl-USS | 2553114..2553122 | + | ACAAGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2529502..2529510 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2508714..2508722 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2477387..2477395 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2380187..2380195 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2187253..2187261 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2184422..2184430 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2182638..2182646 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2023859..2023867 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1928967..1928975 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1919291..1919299 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1716531..1716539 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1591998..1592006 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1567126..1567134 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1549751..1549759 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1523901..1523909 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1518126..1518134 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1479728..1479736 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1364022..1364030 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1272307..1272315 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1271443..1271451 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1269293..1269301 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1197373..1197381 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1129960..1129968 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1091125..1091133 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 927330..927338 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 924635..924643 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 858487..858495 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 734168..734176 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 732356..732364 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 690801..690809 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 343894..343902 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 315281..315289 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 72437..72445 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 56713..56721 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 45704..45712 | - | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 56694..56702 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 100426..100434 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 216290..216298 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 217059..217067 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 345689..345697 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 411158..411166 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 495685..495693 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 524486..524494 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 725616..725624 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 732339..732347 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 909964..909972 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 966307..966315 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1085948..1085956 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1086615..1086623 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1266805..1266813 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1267418..1267426 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1267897..1267905 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1521341..1521349 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1611372..1611380 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1623456..1623464 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 1953907..1953915 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2021177..2021185 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2042620..2042628 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2050571..2050579 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2052122..2052130 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2053254..2053262 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2077526..2077534 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2110032..2110040 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2138711..2138719 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2264810..2264818 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2305515..2305523 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2359086..2359094 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2386804..2386812 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2440652..2440660 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2474776..2474784 | + | AAGTGCGGT |
| NZ_CP126977 | chromosome | Hin-USS | 2480855..2480863 | + | AAGTGCGGT |