NT genes of Gallibacterium anatis strain BJF12
In this species, transformation by exogenous DNA is regulated by the presence of a specific Uptake Signal Sequence (USS) (PMID: 17038178).
Two versions of USS have been described (PMID: 23637627, PMID: 17038178): version A (5'-AAGTGCGGT-3'), named Hin-USS, is found in Haemophilus influenzae (PMID: 7542802, PMID: 22753031, PMID: 6285382), Actinobacillus actinomycetemcomitans (PMID: 12057937, PMID: 17074902) and Avibacterium paragallinarum (PMID: 37212663). ; USS version B (5'-ACAAGCGGT-3'), named the Apl-USS subtype, is found in Actinobacillus pleuropneumoniae (PMID: 17038178).
Here we analyzed the abundance of these 2 USS variants by using the perfect match identified by BLASTn-short.
USS statistics
| USS variants | Sequence | Count | Proportion (%) |
| Hin-USS | AAGTGCGGT | 127 | 72.99 |
| Apl-USS | ACAAGCGGT | 47 | 27.01 |
USS detail table
| Accession | Replicon | USS variant | Coordinates | Strand | Sequence |
|---|---|---|---|---|---|
| NZ_CP126975 | chromosome | Apl-USS | 48093..48101 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 141162..141170 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2623156..2623164 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 199572..199580 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 277584..277592 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 302765..302773 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2487740..2487748 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2480812..2480820 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 338307..338315 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2427342..2427350 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2409613..2409621 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2360934..2360942 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2355773..2355781 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2334442..2334450 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2272234..2272242 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2221065..2221073 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2019446..2019454 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2001973..2001981 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 1845028..1845036 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 1096294..1096302 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 1699791..1699799 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 1162042..1162050 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 1167459..1167467 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 1200975..1200983 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 1263083..1263091 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 1509740..1509748 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 1374532..1374540 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 1386377..1386385 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 1348247..1348255 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 1294552..1294560 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 1273774..1273782 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 1647264..1647272 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 1141803..1141811 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 1778662..1778670 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2156408..2156416 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2203450..2203458 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 598112..598120 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2377132..2377140 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2497827..2497835 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 292748..292756 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2566160..2566168 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 220255..220263 | - | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2592526..2592534 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2640049..2640057 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2659783..2659791 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2751916..2751924 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Apl-USS | 2758950..2758958 | + | ACAAGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 54630..54638 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 61570..61578 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 62513..62521 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2714554..2714562 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 98552..98560 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2684748..2684756 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 209516..209524 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 210285..210293 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2593810..2593818 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2581254..2581262 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 398785..398793 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2402164..2402172 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2399333..2399341 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2397549..2397557 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 451981..451989 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 452714..452722 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 474769..474777 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 475507..475515 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 481827..481835 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 482943..482951 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 532994..533002 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 559334..559342 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2228992..2229000 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2143805..2143813 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2134129..2134137 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 742654..742662 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 755036..755044 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1955345..1955353 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1935625..1935633 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 922534..922542 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 956094..956102 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1807388..1807396 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1767339..1767347 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1760110..1760118 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1734268..1734276 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1727599..1727607 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1096380..1096388 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1112414..1112422 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1115627..1115635 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1123968..1123976 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1682362..1682370 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1126690..1126698 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1130690..1130698 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1165055..1165063 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1636790..1636798 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1176924..1176932 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1177905..1177913 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1185474..1185482 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1188029..1188037 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1191649..1191657 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1193997..1194005 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1205944..1205952 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1209486..1209494 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1210331..1210339 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1230612..1230620 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1236074..1236082 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1554428..1554436 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1294440..1294448 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1468560..1468568 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1467696..1467704 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1465544..1465552 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1399202..1399210 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1463072..1463080 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1463685..1463693 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1464148..1464156 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1332869..1332877 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1272594..1272602 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1238078..1238086 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1201023..1201031 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1200168..1200176 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1190598..1190606 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1179929..1179937 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1176941..1176949 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1167700..1167708 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1162100..1162108 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1161118..1161126 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1152973..1152981 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1131190..1131198 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1130786..1130794 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1126786..1126794 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1124064..1124072 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1117117..1117125 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1116147..1116155 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1115744..1115752 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1112510..1112518 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1109697..1109705 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1096476..1096484 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1094554..1094562 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1093283..1093291 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1726062..1726070 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1731699..1731707 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1824378..1824386 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 1836471..1836479 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 970521..970529 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 935844..935852 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 880772..880780 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 854810..854818 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2028461..2028469 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 756199..756207 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 710866..710874 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2172285..2172293 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2226313..2226321 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2260893..2260901 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2262444..2262452 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2263576..2263584 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 537331..537339 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2287159..2287167 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 471589..471597 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 455740..455748 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2409702..2409710 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2458691..2458699 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 333100..333108 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 307265..307273 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2544810..2544818 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2559527..2559535 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2593835..2593843 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2595450..2595458 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2601874..2601882 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2602854..2602862 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2681561..2681569 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2688216..2688224 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 2707075..2707083 | + | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 70540..70548 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 62430..62438 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 54649..54657 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 44767..44775 | - | AAGTGCGGT |
| NZ_CP126975 | chromosome | Hin-USS | 14710..14718 | - | AAGTGCGGT |