NT genes of Vitreoscilla sp. C1


In this species, transformation by exogenous DNA is regulated by the presence of a specific DNA Uptake Sequence (DUS) (PMID: 23637627).
Eight distinct DUS dialects were identified by Frye et al (PMID: 23637627). Here we analyzed the abundance of these 8 DUS dialects by using the perfect match identified by BLASTn-short.

DUS statistics

DUS variants Sequence Count Proportion (%)
AT-DUS ATGCCGTCTGAA 1 25.00
AG-DUS AGGCCGTCTGAA 0 0.00
TG-wadDUS TGCCTGTCTGAA 0 0.00
AG-mucDUS AGGTCGTCTGAA 0 0.00
AG-simDUS AGGCTGCCTGAA 1 25.00
AG-kingDUS AGGCAGCCTGAA 1 25.00
AA-king3DUS AAGCAGCCTGCA 1 25.00
AG-eikDUS AGGCTACCTGAA 0 0.00

DUS detail table

Accession Replicon DUS variant Coordinates Strand Sequence
  NZ_CP019644 chromosome AA-king3DUS 1313018..1313029 - AAGCAGCCTGCA
  NZ_CP019644 chromosome AG-simDUS 763006..763017 - AGGCTGCCTGAA
  NZ_CP019644 chromosome AG-kingDUS 831345..831356 + AGGCAGCCTGAA
  NZ_CP019644 chromosome AT-DUS 1875536..1875547 + ATGCCGTCTGAA