NT genes of Conchiformibius steedae strain DSM 2580


In this species, transformation by exogenous DNA is regulated by the presence of a specific DNA Uptake Sequence (DUS) (PMID: 23637627).
Eight distinct DUS dialects were identified by Frye et al (PMID: 23637627). Here we analyzed the abundance of these 8 DUS dialects by using the perfect match identified by BLASTn-short.

DUS statistics

DUS variants Sequence Count Proportion (%)
AT-DUS ATGCCGTCTGAA 6 4.35
AG-DUS AGGCCGTCTGAA 0 0.00
TG-wadDUS TGCCTGTCTGAA 0 0.00
AG-mucDUS AGGTCGTCTGAA 1 0.72
AG-simDUS AGGCTGCCTGAA 82 59.42
AG-kingDUS AGGCAGCCTGAA 42 30.43
AA-king3DUS AAGCAGCCTGCA 2 1.45
AG-eikDUS AGGCTACCTGAA 5 3.62

DUS detail table

Accession Replicon DUS variant Coordinates Strand Sequence
  NZ_CP059563 chromosome AG-eikDUS 1772545..1772556 - AGGCTACCTGAA
  NZ_CP059563 chromosome AG-eikDUS 423728..423739 + AGGCTACCTGAA
  NZ_CP059563 chromosome AG-eikDUS 1056212..1056223 - AGGCTACCTGAA
  NZ_CP059563 chromosome AG-eikDUS 462431..462442 - AGGCTACCTGAA
  NZ_CP059563 chromosome AG-eikDUS 1698725..1698736 + AGGCTACCTGAA
  NZ_CP059563 chromosome AA-king3DUS 677903..677914 - AAGCAGCCTGCA
  NZ_CP059563 chromosome AA-king3DUS 527691..527702 - AAGCAGCCTGCA
  NZ_CP059563 chromosome AG-kingDUS 2077033..2077044 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 2032697..2032708 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 2003541..2003552 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 1939853..1939864 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 1825947..1825958 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 351867..351878 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 480255..480266 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 481429..481440 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 686998..687009 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 687584..687595 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 1364127..1364138 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 746931..746942 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 795475..795486 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 973274..973285 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 1016378..1016389 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 1017064..1017075 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 1028824..1028835 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 1058687..1058698 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 969074..969085 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 910115..910126 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 889340..889351 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 869588..869599 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 1256546..1256557 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 794229..794240 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 793120..793131 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 792387..792398 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 779991..780002 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 779307..779318 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 777733..777744 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 747515..747526 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 1465785..1465796 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 1511417..1511428 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 477704..477715 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 1629314..1629325 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 460516..460527 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 1687199..1687210 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 1775380..1775391 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 321419..321430 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 1826993..1827004 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 1876287..1876298 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 1939886..1939897 + AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-kingDUS 121984..121995 - AGGCAGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 14092..14103 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 15237..15248 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 50336..50347 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 2021032..2021043 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 116572..116583 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 121987..121998 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1939883..1939894 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 161195..161206 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1894744..1894755 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 210272..210283 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1876284..1876295 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1826990..1827001 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 321422..321433 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1775377..1775388 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1715046..1715057 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1713573..1713584 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1687196..1687207 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1686098..1686109 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 460519..460530 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1629311..1629322 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 477815..477826 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1560014..1560025 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1511414..1511425 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1504288..1504299 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1465782..1465793 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1463299..1463310 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1462271..1462282 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 679481..679492 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1352138..1352149 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 747518..747529 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 778589..778600 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 779310..779321 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 792390..792401 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 793123..793134 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 794232..794243 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1252782..1252793 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1251393..1251404 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 869591..869602 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 910118..910129 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 969077..969088 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 998636..998647 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1085664..1085675 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1058690..1058701 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1028821..1028832 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1017061..1017072 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1016375..1016386 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 998651..998662 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 973631..973642 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 973271..973282 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 913968..913979 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 908538..908549 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1251374..1251385 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1252763..1252774 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 830264..830275 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 795472..795483 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1307765..1307776 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 746928..746939 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1364130..1364141 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1379818..1379829 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1382546..1382557 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 703221..703232 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 686995..687006 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1463270..1463281 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 621014..621025 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 540123..540134 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1576869..1576880 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 481426..481437 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 480252..480263 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 479863..479874 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 463431..463442 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1717458..1717469 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 351864..351875 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1790761..1790772 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 300314..300325 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1825950..1825961 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 227034..227045 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 1939856..1939867 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 121300..121311 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 2003544..2003555 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 2077036..2077047 + AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 15254..15265 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-simDUS 14109..14120 - AGGCTGCCTGAA
  NZ_CP059563 chromosome AG-mucDUS 477864..477875 - AGGTCGTCTGAA
  NZ_CP059563 chromosome AT-DUS 477726..477737 + ATGCCGTCTGAA
  NZ_CP059563 chromosome AT-DUS 477835..477846 + ATGCCGTCTGAA
  NZ_CP059563 chromosome AT-DUS 1557573..1557584 - ATGCCGTCTGAA
  NZ_CP059563 chromosome AT-DUS 974769..974780 + ATGCCGTCTGAA
  NZ_CP059563 chromosome AT-DUS 481814..481825 - ATGCCGTCTGAA
  NZ_CP059563 chromosome AT-DUS 475336..475347 - ATGCCGTCTGAA