NT genes of Conchiformibius steedae DSM 2580


In this species, transformation by exogenous DNA is regulated by the presence of a specific DNA Uptake Sequence (DUS) (PMID: 23637627).
Eight distinct DUS dialects were identified by Frye et al (PMID: 23637627). Here we analyzed the abundance of these 8 DUS dialects by using the perfect match identified by BLASTn-short.

DUS statistics

DUS variants Sequence Count Proportion (%)
AT-DUS ATGCCGTCTGAA 6 4.35
AG-DUS AGGCCGTCTGAA 0 0.00
TG-wadDUS TGCCTGTCTGAA 0 0.00
AG-mucDUS AGGTCGTCTGAA 1 0.72
AG-simDUS AGGCTGCCTGAA 82 59.42
AG-kingDUS AGGCAGCCTGAA 42 30.43
AA-king3DUS AAGCAGCCTGCA 2 1.45
AG-eikDUS AGGCTACCTGAA 5 3.62

DUS detail table

Accession Replicon DUS variant Coordinates Strand Sequence
  NZ_CP097501 chromosome AG-eikDUS 1722024..1722035 - AGGCTACCTGAA
  NZ_CP097501 chromosome AG-eikDUS 1128226..1128237 - AGGCTACCTGAA
  NZ_CP097501 chromosome AG-eikDUS 340357..340368 - AGGCTACCTGAA
  NZ_CP097501 chromosome AG-eikDUS 266536..266547 + AGGCTACCTGAA
  NZ_CP097501 chromosome AG-eikDUS 1089523..1089534 + AGGCTACCTGAA
  NZ_CP097501 chromosome AA-king3DUS 1343715..1343726 - AAGCAGCCTGCA
  NZ_CP097501 chromosome AA-king3DUS 1193486..1193497 - AAGCAGCCTGCA
  NZ_CP097501 chromosome AG-kingDUS 2029902..2029913 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1724499..1724510 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1634886..1634897 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1575927..1575938 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1555152..1555163 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1535400..1535411 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1460041..1460052 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1458932..1458943 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1458199..1458210 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1445803..1445814 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1445119..1445130 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1443545..1443556 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1413327..1413338 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1143499..1143510 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1126311..1126322 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 987213..987224 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 787778..787789 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 644853..644864 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 600517..600528 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 571361..571372 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 507673..507684 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 393759..393770 - AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 33596..33607 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 79228..79239 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 197125..197136 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 255010..255021 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 343192..343203 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 394805..394816 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 444107..444118 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 507706..507717 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1017661..1017672 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1146050..1146061 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1147224..1147235 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1352810..1352821 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1353396..1353407 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1412743..1412754 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1461287..1461298 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1639086..1639097 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1682190..1682201 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1682876..1682887 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1694636..1694647 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-kingDUS 1922348..1922359 + AGGCAGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 2017913..2017924 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1918584..1918595 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1917195..1917206 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1751476..1751487 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1694633..1694644 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1682873..1682884 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1682187..1682198 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1664463..1664474 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1639443..1639454 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1639083..1639094 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1579780..1579791 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1574350..1574361 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1496076..1496087 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1461284..1461295 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1412740..1412751 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1369033..1369044 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1352807..1352818 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1286810..1286821 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1205918..1205929 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1147221..1147232 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1146047..1146058 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1145658..1145669 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1129226..1129237 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1017658..1017669 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 966108..966119 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 892828..892839 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 787094..787105 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 682534..682545 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 681389..681400 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 588852..588863 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 507703..507714 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 462564..462575 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 444104..444115 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 394802..394813 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 343189..343200 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 282857..282868 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 281384..281395 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 255007..255018 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 253909..253920 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 197122..197133 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 127825..127836 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 79225..79236 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 72099..72110 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 33593..33604 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 31110..31121 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 30082..30093 - AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 31081..31092 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 144680..144691 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 285269..285280 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 358573..358584 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 393762..393773 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 507676..507687 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 571364..571375 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 644856..644867 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 681372..681383 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 682517..682528 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 717616..717627 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 782366..782377 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 787781..787792 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 826989..827000 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 876066..876077 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 987216..987227 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1126314..1126325 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1143610..1143621 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1345293..1345304 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1413330..1413341 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1444401..1444412 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1445122..1445133 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1458202..1458213 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1458935..1458946 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1460044..1460055 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1535403..1535414 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1575930..1575941 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1634889..1634900 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1664448..1664459 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1724502..1724513 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1917176..1917187 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1918565..1918576 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 1973567..1973578 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 2029905..2029916 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 2045593..2045604 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-simDUS 2048321..2048332 + AGGCTGCCTGAA
  NZ_CP097501 chromosome AG-mucDUS 1143659..1143670 - AGGTCGTCTGAA
  NZ_CP097501 chromosome AT-DUS 1147609..1147620 - ATGCCGTCTGAA
  NZ_CP097501 chromosome AT-DUS 1141131..1141142 - ATGCCGTCTGAA
  NZ_CP097501 chromosome AT-DUS 125384..125395 - ATGCCGTCTGAA
  NZ_CP097501 chromosome AT-DUS 1143521..1143532 + ATGCCGTCTGAA
  NZ_CP097501 chromosome AT-DUS 1143630..1143641 + ATGCCGTCTGAA
  NZ_CP097501 chromosome AT-DUS 1640581..1640592 + ATGCCGTCTGAA